Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30210 | Canola | cytosol | 95.7 | 95.7 |
| CDY30209 | Canola | cytosol | 58.42 | 56.21 |
| AT4G29610.1 | Thale cress | cytosol | 57.35 | 54.61 |
| CDY65102 | Canola | cytosol | 56.63 | 53.74 |
| CDY58323 | Canola | cytosol | 56.63 | 53.74 |
| CDY54276 | Canola | cytosol | 59.14 | 52.72 |
| AT4G29600.1 | Thale cress | cytosol | 56.63 | 51.47 |
| HORVU3Hr1G020270.1 | Barley | extracellular, peroxisome | 12.54 | 49.3 |
| AT4G29650.1 | Thale cress | cytosol | 43.73 | 48.61 |
| HORVU4Hr1G074340.1 | Barley | extracellular, peroxisome | 12.19 | 47.89 |
| VIT_11s0016g02340.t01 | Wine grape | cytosol | 52.69 | 47.88 |
| KRH49056 | Soybean | plastid | 47.31 | 47.48 |
| KRH41424 | Soybean | plasma membrane | 46.59 | 46.93 |
| AT4G29630.1 | Thale cress | cytosol | 36.92 | 46.19 |
| AT4G29620.1 | Thale cress | cytosol | 54.12 | 44.81 |
| CDY54272 | Canola | cytosol | 44.8 | 44.8 |
| KRH60135 | Soybean | cytosol | 46.95 | 44.71 |
| GSMUA_Achr7P24040_001 | Banana | cytosol | 44.44 | 43.66 |
| HORVU5Hr1G034090.1 | Barley | mitochondrion | 6.81 | 43.18 |
| HORVU5Hr1G075600.1 | Barley | mitochondrion | 6.81 | 43.18 |
| HORVU4Hr1G083900.1 | Barley | cytosol, mitochondrion, plastid | 21.51 | 43.17 |
| PGSC0003DMT400020044 | Potato | cytosol | 49.82 | 42.9 |
| Solyc07g021750.1.1 | Tomato | cytosol | 48.75 | 41.72 |
| HORVU4Hr1G036900.1 | Barley | cytosol, extracellular, mitochondrion | 21.51 | 40.27 |
| AT4G29640.1 | Thale cress | cytosol | 49.46 | 39.88 |
| CDY54275 | Canola | mitochondrion | 40.86 | 39.86 |
| Os01t0712700-01 | Rice | cytosol | 44.44 | 39.74 |
| Zm00001d011710_P001 | Maize | cytosol, extracellular | 44.09 | 39.42 |
| Zm00001d043674_P001 | Maize | cytosol | 44.44 | 39.24 |
| HORVU3Hr1G067290.1 | Barley | cytosol | 43.01 | 38.71 |
| TraesCS3B01G278200.1 | Wheat | cytosol | 43.01 | 38.71 |
| EES03512 | Sorghum | cytosol | 43.37 | 38.29 |
| TraesCS3A01G249300.1 | Wheat | cytosol | 42.29 | 38.06 |
| TraesCS3D01G249300.1 | Wheat | cytosol | 42.29 | 38.06 |
| GSMUA_Achr3P32380_001 | Banana | cytosol | 26.88 | 36.41 |
| KRH63089 | Soybean | cytosol | 24.01 | 36.02 |
| Os06t0611600-00 | Rice | mitochondrion | 26.88 | 35.71 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, golgi | 37.28 | 26.26 |
| OQU91901 | Sorghum | cytosol, plastid | 19.71 | 18.46 |
Protein Annotations
| KEGG:00240+3.5.4.5 | KEGG:00983+3.5.4.5 | Gene3D:3.40.140.10 | MapMan:6.2.4.2 | GO:A0A078IY48 | UniProt:A0A078IY48 |
| InterPro:APOBEC/CMP_deaminase_Zn-bd | EnsemblPlants:CDY54269 | ProteinID:CDY54269 | ProteinID:CDY54269.1 | InterPro:CMP_dCMP_dom | InterPro:Cyd/dCyd_deaminase_Zn-bd |
| InterPro:Cyt_deam_dimer | InterPro:Cytidine_deaminase-like | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004126 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009972 |
| GO:GO:0009987 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00013746001 | InterPro:IPR002125 | PFAM:PF00383 | PFAM:PF08211 |
| PIRSF:PIRSF006334 | ScanProsite:PS00903 | PFscan:PS51747 | PANTHER:PTHR11644 | PANTHER:PTHR11644:SF15 | MetaCyc:PWY-6556 |
| MetaCyc:PWY-7181 | MetaCyc:PWY-7193 | MetaCyc:PWY-7199 | SUPFAM:SSF53927 | TIGRFAMs:TIGR01355 | UniParc:UPI0004EDE347 |
Description
BnaC07g50710DBnaC07g50710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IY48]
Coordinates
chrLK033298:+:4926..5765
Molecular Weight (calculated)
30644.5 Da
IEP (calculated)
7.047
GRAVY (calculated)
0.186
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQPSKFVLI NEPYGVVSDP MDLVSLIDRK VYLRMAPISG RHVGAVGLGF SRKVFLGINV ELPRLPLHHS IHAEQFLVVN LMLNSEEHLT HLAVSSSDSV
101: FHAPCGHCRQ FLQEISEAPI IQVLIKDPAL GIQEFVTLKS LLPRHSNLLP DLLQARDNKL LLLSSEGCED LVLLRTALAA ANRSFAPYSK CPSGVALKDR
201: EGKVYRGWYI ESAAYNPSLG PVQAALVDFV ISGGTKFEDI VEAVLVEKRD AVVSQEKTAK MILETIADPK CAVKVFHCV
101: FHAPCGHCRQ FLQEISEAPI IQVLIKDPAL GIQEFVTLKS LLPRHSNLLP DLLQARDNKL LLLSSEGCED LVLLRTALAA ANRSFAPYSK CPSGVALKDR
201: EGKVYRGWYI ESAAYNPSLG PVQAALVDFV ISGGTKFEDI VEAVLVEKRD AVVSQEKTAK MILETIADPK CAVKVFHCV
001: MKFVYTPSEA AEEGVRGPSD LPKLIDKAMS LARAPVSTFK VGAVGLTSSG EVFLGVNVEF PNLPLHHTIH AEQFLVTNLA LNSMKKLTHI AVSVTGTIFG
101: APCGHCRQFY QEMRNAPEIE ILIKRPKDGI DEFMSLKSLM PERFGPDSIL PEDASLLLEQ RDNSLVLSDP EEICSDPEDC SHTKCRALAA ANKSYAPYSK
201: CPSGVALICG GEVYKGWYIE SVAYNPSLGP VEAALVDFVA RGGGKEFNEI TEVVLVEMKD VKVSQEATAR TFLDKIAPKC DFKVLHCYKT NKN
101: APCGHCRQFY QEMRNAPEIE ILIKRPKDGI DEFMSLKSLM PERFGPDSIL PEDASLLLEQ RDNSLVLSDP EEICSDPEDC SHTKCRALAA ANKSYAPYSK
201: CPSGVALICG GEVYKGWYIE SVAYNPSLGP VEAALVDFVA RGGGKEFNEI TEVVLVEMKD VKVSQEATAR TFLDKIAPKC DFKVLHCYKT NKN
Arabidopsis Description
CDA6Cytidine deaminase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU86]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.