CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63089	Soybean	cytosol	48.56	72.58
KRH60135	Soybean	cytosol	66.19	62.8
KRH41424	Soybean	plasma membrane	61.51	61.73
HORVU3Hr1G020270.1	Barley	extracellular, peroxisome	14.75	57.75
VIT_11s0016g02340.t01	Wine grape	cytosol	63.31	57.33
CDY30209	Canola	cytosol	59.71	57.24
CDY65102	Canola	cytosol	58.63	55.44
CDY58323	Canola	cytosol	58.63	55.44
Bra039004.1-P	Field mustard	cytosol	57.91	54.95
HORVU4Hr1G074340.1	Barley	extracellular, peroxisome	14.03	54.93
AT2G19570.1	Thale cress	cytosol	59.35	54.82
Bra024140.1-P	Field mustard	cytosol	60.07	54.4
CDY54276	Canola	cytosol	60.07	53.35
HORVU5Hr1G075600.1	Barley	mitochondrion	8.27	52.27
HORVU5Hr1G034090.1	Barley	mitochondrion	8.27	52.27
PGSC0003DMT400020044	Potato	cytosol	58.63	50.31
GSMUA_Achr7P24040_001	Banana	cytosol	51.08	50.0
Solyc07g021750.1.1	Tomato	cytosol	58.27	49.69
HORVU4Hr1G083900.1	Barley	cytosol, mitochondrion, plastid	24.46	48.92
GSMUA_Achr3P32380_001	Banana	cytosol	35.61	48.06
CDY30210	Canola	cytosol	47.84	47.67
Bra024141.1-P	Field mustard	cytosol	47.84	47.67
AT4G29630.1	Thale cress	cytosol	38.13	47.53
CDY54269	Canola	cytosol	47.48	47.31
AT4G29610.1	Thale cress	cytosol	49.28	46.76
HORVU3Hr1G067290.1	Barley	cytosol	50.36	45.16
HORVU4Hr1G036900.1	Barley	cytosol, extracellular, mitochondrion	24.1	44.97
TraesCS3A01G249300.1	Wheat	cytosol	50.0	44.84
TraesCS3B01G278200.1	Wheat	cytosol	50.0	44.84
AT4G29600.1	Thale cress	cytosol	49.28	44.63
AT4G29650.1	Thale cress	cytosol	40.29	44.62
Os01t0712700-01	Rice	cytosol	50.0	44.55
Zm00001d011710_P001	Maize	cytosol, extracellular	49.64	44.23
TraesCS3D01G249300.1	Wheat	cytosol	49.28	44.19
Zm00001d043674_P001	Maize	cytosol	49.64	43.67
EES03512	Sorghum	cytosol	48.92	43.04
Os06t0611600-00	Rice	mitochondrion	32.37	42.86
AT4G29570.1	Thale cress	cytosol	41.73	39.59
CDY54272	Canola	cytosol	39.57	39.43
AT4G29620.1	Thale cress	cytosol	47.48	39.17
CDY54275	Canola	mitochondrion	37.77	36.71
AT4G29640.1	Thale cress	cytosol	42.09	33.81
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, golgi	45.32	31.82
AT4G29580.2	Thale cress	nucleus	39.57	24.72
OQU91901	Sorghum	cytosol, plastid	21.22	19.8

Protein Annotations

KEGG:00240+3.5.4.5	KEGG:00983+3.5.4.5	EntrezGene:100787103	Gene3D:3.40.140.10	MapMan:6.2.4.2	UniProt:A0A0R0J2N5
EMBL:ACUP02004330	InterPro:APOBEC/CMP_deaminase_Zn-bd	InterPro:CMP_dCMP_dom	InterPro:Cyd/dCyd_deaminase_Zn-bd	InterPro:Cyt_deam_dimer	InterPro:Cytidine_deaminase-like
EnsemblPlantsGene:GLYMA_07G129300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004126	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009972	GO:GO:0009987
GO:GO:0016787	InterPro:IPR002125	EnsemblPlants:KRH49056	ProteinID:KRH49056	ProteinID:KRH49056.1	PFAM:PF00383
PFAM:PF08211	PIRSF:PIRSF006334	ScanProsite:PS00903	PFscan:PS51747	PANTHER:PTHR11644	PANTHER:PTHR11644:SF15
MetaCyc:PWY-6556	MetaCyc:PWY-7181	MetaCyc:PWY-7193	MetaCyc:PWY-7199	SUPFAM:SSF53927	TIGRFAMs:TIGR01355
UniParc:UPI00018C68C6	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:15395623..15397033

Molecular Weight (calculated)

29670.2 Da

IEP (calculated)

6.720

GRAVY (calculated)

0.066

Length

278 amino acids

Sequence
(BLAST)

001: MEPRFVISAS EAESQSISKL LPSLVSSSQS LARPSISNFP VAAVGLAASG RIFVGVNVEF PGLPFHHTIH AEQFLLTNMA NNAETRLDSF AVSAAPCGHC
101: RQFLQELRDA PDIQILITSH KNPHFSPLSH FLSHHFGPHD LLPKTVPLLL EPRHNALSLP QNDHFNALAI AALEAANNSH APYSASPSGV ALLDSKGNVF
201: KGSYIESAAY NPSLGPLQAA IVAFIAGGGG DYEEIVAAVL VEKEGAVIKQ DHTARLLLHS IAPRCHFNNF LASQSPST

Best Arabidopsis Sequence Match ( AT2G19570.1 )
(BLAST)

001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A

Arabidopsis Description

CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.