Factsheet for VIT_11s0016g02340.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58323	Canola	cytosol	62.22	64.97
CDY30209	Canola	cytosol	61.24	64.83
Bra039004.1-P	Field mustard	cytosol	61.56	64.51
KRH60135	Soybean	cytosol	61.24	64.16
CDY65102	Canola	cytosol	61.24	63.95
AT2G19570.1	Thale cress	cytosol	62.22	63.46
HORVU4Hr1G074340.1	Barley	extracellular, peroxisome	14.66	63.38
HORVU3Hr1G020270.1	Barley	extracellular, peroxisome	14.66	63.38
KRH49056	Soybean	plastid	57.33	63.31
KRH41424	Soybean	plasma membrane	57.0	63.18
HORVU5Hr1G075600.1	Barley	mitochondrion	8.79	61.36
HORVU5Hr1G034090.1	Barley	mitochondrion	8.79	61.36
Bra024140.1-P	Field mustard	cytosol	61.24	61.24
CDY54276	Canola	cytosol	60.59	59.42
GSMUA_Achr7P24040_001	Banana	cytosol	53.75	58.1
PGSC0003DMT400020044	Potato	cytosol	61.24	58.02
Solyc07g021750.1.1	Tomato	cytosol	58.96	55.52
GSMUA_Achr3P32380_001	Banana	cytosol	36.48	54.37
HORVU4Hr1G083900.1	Barley	cytosol, mitochondrion, plastid	24.43	53.96
CDY30210	Canola	cytosol	48.21	53.05
Bra024141.1-P	Field mustard	cytosol	48.21	53.05
CDY54269	Canola	cytosol	47.88	52.69
KRH63089	Soybean	cytosol	31.27	51.61
AT4G29610.1	Thale cress	cytosol	48.86	51.19
AT4G29650.1	Thale cress	cytosol	41.69	51.0
AT4G29630.1	Thale cress	cytosol	36.48	50.22
AT4G29600.1	Thale cress	cytosol	49.84	49.84
HORVU4Hr1G036900.1	Barley	cytosol, extracellular, mitochondrion	23.78	48.99
HORVU3Hr1G067290.1	Barley	cytosol	49.19	48.71
TraesCS3A01G249300.1	Wheat	cytosol	49.19	48.71
TraesCS3B01G278200.1	Wheat	cytosol	48.86	48.39
TraesCS3D01G249300.1	Wheat	cytosol	48.86	48.39
Os01t0712700-01	Rice	cytosol	48.53	47.76
Zm00001d011710_P001	Maize	cytosol, extracellular	48.21	47.44
Zm00001d043674_P001	Maize	cytosol	47.88	46.52
EES03512	Sorghum	cytosol	47.23	45.89
Os06t0611600-00	Rice	mitochondrion	30.62	44.76
AT4G29570.1	Thale cress	cytosol	41.69	43.69
AT4G29620.1	Thale cress	cytosol	46.25	42.14
CDY54272	Canola	cytosol	36.81	40.5
AT4G29640.1	Thale cress	cytosol	43.32	38.44
CDY54275	Canola	mitochondrion	34.53	37.06
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, golgi	46.58	36.11
AT4G29580.2	Thale cress	nucleus	40.07	27.64
OQU91901	Sorghum	cytosol, plastid	20.2	20.81

Protein Annotations

KEGG:00240+3.5.4.5	KEGG:00983+3.5.4.5	EntrezGene:100245702	wikigene:100245702	Gene3D:3.40.140.10	MapMan:6.2.4.2
ProteinID:CCB51453	ProteinID:CCB51453.1	InterPro:CMP_dCMP_dom	InterPro:Cyd/dCyd_deaminase_Zn-bd	InterPro:Cyt_deam_dimer	InterPro:Cytidine_deaminase-like
UniProt:F6HGQ9	EMBL:FN595756	GO:GO:0003674	GO:GO:0003824	GO:GO:0004126	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009972	GO:GO:0009987
GO:GO:0016787	InterPro:IPR002125	EntrezGene:LOC100245702	wikigene:LOC100245702	PFAM:PF00383	PFAM:PF08211
PIRSF:PIRSF006334	PFscan:PS51747	PANTHER:PTHR11644	PANTHER:PTHR11644:SF15	SUPFAM:SSF53927	TIGR:TC63423
TIGRFAMs:TIGR01355	UniParc:UPI0002108495	ArrayExpress:VIT_11s0016g02340	EnsemblPlantsGene:VIT_11s0016g02340	EnsemblPlants:VIT_11s0016g02340.t01	unigene:Vvi.5484
RefSeq:XP_002282373	RefSeq:XP_002282373.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:-:1886162..1888997

Molecular Weight (calculated)

33228.7 Da

IEP (calculated)

5.419

GRAVY (calculated)

-0.120

Length

307 amino acids

Sequence
(BLAST)

001: MERSRFVIEA SEAESKAEKA GLTVMQLLPS LVNSAQKLAR PPISKYHVGA VGLGSSGRIF LGVNLEFPGL PLNHSVHAEQ FLITNLSLKA ETHLRCLAVS
101: AAPCGHCRQF FQEIRDAPDI KVLITSSSDQ EFRPLSEFLP NRFGPDDLLD KDTPLLLEPQ NNGLSLVNAI GSQLVNTGCN GVCACDQDSL KYEALEAANK
201: SHAPYSGCPS GVALIDSEGR VYRGSYMESA AYNPSLGPVQ AALVAYIAGG GDGYEEIVGA VLVEKEEAQV KQEQTARLLL NLISPKCEFR VFYCNIGMKR
301: RRIDGES

Best Arabidopsis Sequence Match ( AT2G19570.1 )
(BLAST)

001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A

Arabidopsis Description

CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.