Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES03512 | Sorghum | cytosol | 85.44 | 85.44 |
| Zm00001d011710_P001 | Maize | cytosol, extracellular | 83.23 | 84.29 |
| Os01t0712700-01 | Rice | cytosol | 79.43 | 80.45 |
| TraesCS3B01G278200.1 | Wheat | cytosol | 75.95 | 77.42 |
| HORVU3Hr1G067290.1 | Barley | cytosol | 75.95 | 77.42 |
| TraesCS3A01G249300.1 | Wheat | cytosol | 75.63 | 77.1 |
| TraesCS3D01G249300.1 | Wheat | cytosol | 75.0 | 76.45 |
| HORVU3Hr1G020270.1 | Barley | extracellular, peroxisome | 16.77 | 74.65 |
| HORVU4Hr1G074340.1 | Barley | extracellular, peroxisome | 16.46 | 73.24 |
| HORVU4Hr1G083900.1 | Barley | cytosol, mitochondrion, plastid | 31.65 | 71.94 |
| HORVU5Hr1G075600.1 | Barley | mitochondrion | 9.49 | 68.18 |
| HORVU5Hr1G034090.1 | Barley | mitochondrion | 9.49 | 68.18 |
| Os06t0611600-00 | Rice | mitochondrion | 43.04 | 64.76 |
| HORVU4Hr1G036900.1 | Barley | cytosol, extracellular, mitochondrion | 30.38 | 64.43 |
| GSMUA_Achr7P24040_001 | Banana | cytosol | 54.11 | 60.21 |
| GSMUA_Achr3P32380_001 | Banana | cytosol | 36.71 | 56.31 |
| CDY30209 | Canola | cytosol | 47.15 | 51.38 |
| KRH49056 | Soybean | plastid | 43.67 | 49.64 |
| CDY58323 | Canola | cytosol | 45.89 | 49.32 |
| Bra039004.1-P | Field mustard | cytosol | 45.57 | 49.15 |
| CDY65102 | Canola | cytosol | 45.57 | 48.98 |
| Bra024140.1-P | Field mustard | cytosol | 47.47 | 48.86 |
| CDY54276 | Canola | cytosol | 47.78 | 48.24 |
| KRH41424 | Soybean | plasma membrane | 42.09 | 48.01 |
| VIT_11s0016g02340.t01 | Wine grape | cytosol | 46.52 | 47.88 |
| KRH60135 | Soybean | cytosol | 43.99 | 47.44 |
| AT2G19570.1 | Thale cress | cytosol | 44.62 | 46.84 |
| Bra024141.1-P | Field mustard | cytosol | 39.56 | 44.8 |
| CDY30210 | Canola | cytosol | 39.56 | 44.8 |
| PGSC0003DMT400020044 | Potato | cytosol | 45.89 | 44.75 |
| Solyc07g021750.1.1 | Tomato | cytosol | 45.89 | 44.48 |
| CDY54269 | Canola | cytosol | 39.24 | 44.44 |
| KRH63089 | Soybean | cytosol | 25.63 | 43.55 |
| AT4G29610.1 | Thale cress | cytosol | 39.24 | 42.32 |
| AT4G29630.1 | Thale cress | cytosol | 29.11 | 41.26 |
| AT4G29600.1 | Thale cress | cytosol | 39.87 | 41.04 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, golgi | 50.63 | 40.4 |
| AT4G29650.1 | Thale cress | cytosol | 31.65 | 39.84 |
| AT4G29620.1 | Thale cress | cytosol | 37.97 | 35.61 |
| AT4G29570.1 | Thale cress | cytosol | 32.91 | 35.49 |
| CDY54272 | Canola | cytosol | 31.33 | 35.48 |
| AT4G29640.1 | Thale cress | cytosol | 35.76 | 32.66 |
| CDY54275 | Canola | mitochondrion | 27.85 | 30.77 |
| AT4G29580.2 | Thale cress | nucleus | 31.01 | 22.02 |
Protein Annotations
| KEGG:00240+3.5.4.5 | KEGG:00983+3.5.4.5 | Gene3D:3.40.140.10 | MapMan:6.2.4.2 | UniProt:A0A1D6NE76 | InterPro:APOBEC/CMP_deaminase_Zn-bd |
| InterPro:CMP_dCMP_dom | InterPro:Cyd/dCyd_deaminase_Zn-bd | InterPro:Cyt_deam_dimer | InterPro:Cytidine_deaminase-like | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004126 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009972 | GO:GO:0009987 | GO:GO:0016787 | InterPro:IPR002125 | ProteinID:ONM38788.1 |
| PFAM:PF00383 | PFAM:PF08211 | PIRSF:PIRSF006334 | ScanProsite:PS00903 | PFscan:PS51747 | PANTHER:PTHR11644 |
| PANTHER:PTHR11644:SF2 | SUPFAM:SSF53927 | TIGRFAMs:TIGR01053 | TIGRFAMs:TIGR01355 | UniParc:UPI0002217E97 | EnsemblPlantsGene:Zm00001d043674 |
| EnsemblPlants:Zm00001d043674_P001 | EnsemblPlants:Zm00001d043674_T001 | InterPro:Znf_LSD1 | SEG:seg | : | : |
Description
Cytidine deaminase
Coordinates
chr3:+:206991601..206992551
Molecular Weight (calculated)
32221.3 Da
IEP (calculated)
5.140
GRAVY (calculated)
0.247
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEQVVAPK PEAAAAAAAT SVELTGFVMG AEDAERAAAA AGVATVQDLL PLLVPSARKR AQVPISGFPV GAVGLGASGR VYVGVNLEFR GLPLCHSVHA
101: EQFLVANAAA AGEPELRAVA VSHMPCGHCR QFLQEIRGAA SIRILVTSDA AEGCAPEWRT VASLLLRPFG PHDLLPGDVP LVLEAHDNAL GDPVANGLAR
201: SDLDARLRQA AEAAARAAHA PYSKCPSGFA VADGDGRIYA GGCLESAAYN PTLGPVQAAI IAMVAAGGCS AGDVVAAALV EKEQASVAQE ATARIFLDAV
301: APHASFHVYN YRPSDA
101: EQFLVANAAA AGEPELRAVA VSHMPCGHCR QFLQEIRGAA SIRILVTSDA AEGCAPEWRT VASLLLRPFG PHDLLPGDVP LVLEAHDNAL GDPVANGLAR
201: SDLDARLRQA AEAAARAAHA PYSKCPSGFA VADGDGRIYA GGCLESAAYN PTLGPVQAAI IAMVAAGGCS AGDVVAAALV EKEQASVAQE ATARIFLDAV
301: APHASFHVYN YRPSDA
001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A
Arabidopsis Description
CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.