Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G29600.1 | Thale cress | cytosol | 80.27 | 58.31 |
| HORVU4Hr1G074340.1 | Barley | extracellular, peroxisome | 16.59 | 52.11 |
| HORVU3Hr1G020270.1 | Barley | extracellular, peroxisome | 16.14 | 50.7 |
| HORVU5Hr1G075600.1 | Barley | mitochondrion | 9.87 | 50.0 |
| HORVU5Hr1G034090.1 | Barley | mitochondrion | 9.87 | 50.0 |
| AT4G29620.1 | Thale cress | cytosol | 73.09 | 48.37 |
| AT4G29610.1 | Thale cress | cytosol | 54.26 | 41.3 |
| HORVU4Hr1G083900.1 | Barley | cytosol, mitochondrion, plastid | 25.56 | 41.01 |
| GSMUA_Achr3P32380_001 | Banana | cytosol | 37.67 | 40.78 |
| KRH63089 | Soybean | cytosol | 33.63 | 40.32 |
| KRH49056 | Soybean | plastid | 47.53 | 38.13 |
| Os06t0611600-00 | Rice | mitochondrion | 35.87 | 38.1 |
| AT2G19570.1 | Thale cress | cytosol | 51.12 | 37.87 |
| CDY30210 | Canola | cytosol | 46.64 | 37.28 |
| Bra024141.1-P | Field mustard | cytosol | 46.64 | 37.28 |
| KRH60135 | Soybean | cytosol | 48.88 | 37.2 |
| CDY54269 | Canola | cytosol | 46.19 | 36.92 |
| VIT_11s0016g02340.t01 | Wine grape | cytosol | 50.22 | 36.48 |
| KRH41424 | Soybean | plasma membrane | 45.29 | 36.46 |
| HORVU4Hr1G036900.1 | Barley | cytosol, extracellular, mitochondrion | 24.22 | 36.24 |
| AT4G29650.1 | Thale cress | cytosol | 38.56 | 34.26 |
| GSMUA_Achr7P24040_001 | Banana | cytosol | 43.5 | 34.15 |
| AT4G29640.1 | Thale cress | cytosol | 50.67 | 32.66 |
| TraesCS3D01G249300.1 | Wheat | cytosol | 43.05 | 30.97 |
| HORVU3Hr1G067290.1 | Barley | cytosol | 43.05 | 30.97 |
| TraesCS3A01G249300.1 | Wheat | cytosol | 43.05 | 30.97 |
| PGSC0003DMT400020044 | Potato | cytosol | 44.84 | 30.86 |
| TraesCS3B01G278200.1 | Wheat | cytosol | 42.6 | 30.65 |
| Os01t0712700-01 | Rice | cytosol | 42.6 | 30.45 |
| AT4G29570.1 | Thale cress | cytosol | 39.91 | 30.38 |
| Solyc07g021750.1.1 | Tomato | cytosol | 44.39 | 30.37 |
| Zm00001d011710_P001 | Maize | cytosol, extracellular | 42.15 | 30.13 |
| EES03512 | Sorghum | cytosol | 41.26 | 29.11 |
| Zm00001d043674_P001 | Maize | cytosol | 41.26 | 29.11 |
| AT4G29580.2 | Thale cress | nucleus | 41.26 | 20.67 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, golgi | 33.63 | 18.94 |
| OQU91901 | Sorghum | cytosol, plastid | 17.94 | 13.42 |
Protein Annotations
| KEGG:00240+3.5.4.5 | KEGG:00983+3.5.4.5 | Gene3D:3.40.140.10 | MapMan:6.2.4.2 | EntrezGene:829084 | ProteinID:AAC69568.1 |
| ProteinID:AAD30446.1 | ProteinID:AEE85653.1 | InterPro:APOBEC/CMP_deaminase_Zn-bd | ArrayExpress:AT4G29630 | EnsemblPlantsGene:AT4G29630 | RefSeq:AT4G29630 |
| TAIR:AT4G29630 | RefSeq:AT4G29630-TAIR-G | EnsemblPlants:AT4G29630.1 | TAIR:AT4G29630.1 | Unigene:At.54548 | ProteinID:CAB45323.1 |
| ProteinID:CAB79721.1 | InterPro:CMP_dCMP_dom | InterPro:Cyd/dCyd_deaminase_Zn-bd | InterPro:Cyt_deam_dimer | InterPro:Cytidine_deaminase-like | EMBL:DQ056662 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004126 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009972 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0046872 |
| InterPro:IPR002125 | RefSeq:NP_194692.1 | PFAM:PF00383 | PFAM:PF08211 | PIRSF:PIRSF006334 | ScanProsite:PS00903 |
| PFscan:PS51747 | PANTHER:PTHR11644 | PANTHER:PTHR11644:SF2 | UniProt:Q9S847 | SUPFAM:SSF53927 | TIGRFAMs:TIGR01355 |
| UniParc:UPI0000048A1C | : | : | : | : | : |
Description
CDA3Cytidine deaminase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S847]
Coordinates
chr4:+:14522569..14523240
Molecular Weight (calculated)
24180.1 Da
IEP (calculated)
7.837
GRAVY (calculated)
-0.153
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQDQYKFVF TAKEAESEGV TEPMRLPNLI GKAMSLALAP ISKYKVGAVG RARSGRIYLG VNVELPGLPL HHSIHAEQFL VTNLALNSEK GLHLLAVTIS
101: TDGNDFGAPC GNCRQFLMEI SKALNIKILL KSKYEAEGSF KSLRLLLPDR FSPDDVLPKG SPLLLEKRHN CLSLSGSAEE ICSSDCSHLK CKALAAANNS
201: FSPYTNSPSG VALQDDDGNW YRG
101: TDGNDFGAPC GNCRQFLMEI SKALNIKILL KSKYEAEGSF KSLRLLLPDR FSPDDVLPKG SPLLLEKRHN CLSLSGSAEE ICSSDCSHLK CKALAAANNS
201: FSPYTNSPSG VALQDDDGNW YRG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.