Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043674_P001 | Maize | cytosol | 84.29 | 83.23 |
| Os01t0712700-01 | Rice | cytosol | 81.41 | 81.41 |
| HORVU3Hr1G067290.1 | Barley | cytosol | 76.6 | 77.1 |
| TraesCS3A01G249300.1 | Wheat | cytosol | 76.28 | 76.77 |
| TraesCS3B01G278200.1 | Wheat | cytosol | 75.96 | 76.45 |
| TraesCS3D01G249300.1 | Wheat | cytosol | 75.64 | 76.13 |
| HORVU4Hr1G074340.1 | Barley | extracellular, peroxisome | 17.31 | 76.06 |
| HORVU5Hr1G075600.1 | Barley | mitochondrion | 10.58 | 75.0 |
| HORVU5Hr1G034090.1 | Barley | mitochondrion | 10.58 | 75.0 |
| HORVU3Hr1G020270.1 | Barley | extracellular, peroxisome | 16.99 | 74.65 |
| HORVU4Hr1G083900.1 | Barley | cytosol, mitochondrion, plastid | 32.05 | 71.94 |
| HORVU4Hr1G036900.1 | Barley | cytosol, extracellular, mitochondrion | 30.77 | 64.43 |
| Os06t0611600-00 | Rice | mitochondrion | 43.27 | 64.29 |
| GSMUA_Achr7P24040_001 | Banana | cytosol | 56.41 | 61.97 |
| GSMUA_Achr3P32380_001 | Banana | cytosol | 37.5 | 56.8 |
| CDY30209 | Canola | cytosol | 48.08 | 51.72 |
| CDY58323 | Canola | cytosol | 46.79 | 49.66 |
| KRH49056 | Soybean | plastid | 44.23 | 49.64 |
| Bra039004.1-P | Field mustard | cytosol | 46.47 | 49.49 |
| Bra024140.1-P | Field mustard | cytosol | 48.4 | 49.19 |
| CDY65102 | Canola | cytosol | 46.15 | 48.98 |
| KRH60135 | Soybean | cytosol | 45.83 | 48.81 |
| KRH41424 | Soybean | plasma membrane | 43.27 | 48.74 |
| CDY54276 | Canola | cytosol | 48.72 | 48.56 |
| VIT_11s0016g02340.t01 | Wine grape | cytosol | 47.44 | 48.21 |
| AT2G19570.1 | Thale cress | cytosol | 45.83 | 47.51 |
| PGSC0003DMT400020044 | Potato | cytosol | 48.08 | 46.3 |
| Solyc07g021750.1.1 | Tomato | cytosol | 48.08 | 46.01 |
| CDY30210 | Canola | cytosol | 40.06 | 44.8 |
| Bra024141.1-P | Field mustard | cytosol | 40.06 | 44.8 |
| CDY54269 | Canola | cytosol | 39.42 | 44.09 |
| AT4G29610.1 | Thale cress | cytosol | 41.35 | 44.03 |
| AT4G29630.1 | Thale cress | cytosol | 30.13 | 42.15 |
| KRH63089 | Soybean | cytosol | 25.0 | 41.94 |
| AT4G29650.1 | Thale cress | cytosol | 33.65 | 41.83 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, golgi | 52.56 | 41.41 |
| AT4G29600.1 | Thale cress | cytosol | 40.71 | 41.37 |
| AT4G29620.1 | Thale cress | cytosol | 40.06 | 37.09 |
| AT4G29570.1 | Thale cress | cytosol | 33.65 | 35.84 |
| CDY54272 | Canola | cytosol | 30.45 | 34.05 |
| AT4G29640.1 | Thale cress | cytosol | 36.54 | 32.95 |
| CDY54275 | Canola | mitochondrion | 28.85 | 31.47 |
| OQU91901 | Sorghum | cytosol, plastid | 26.6 | 27.85 |
| AT4G29580.2 | Thale cress | nucleus | 31.41 | 22.02 |
Protein Annotations
| KEGG:00240+3.5.4.5 | KEGG:00983+3.5.4.5 | Gene3D:3.40.140.10 | MapMan:6.2.4.2 | UniProt:A0A1D6G380 | InterPro:APOBEC/CMP_deaminase_Zn-bd |
| ProteinID:AQK97812.1 | InterPro:CMP_dCMP_dom | InterPro:Cyd/dCyd_deaminase_Zn-bd | InterPro:Cyt_deam_dimer | InterPro:Cytidine_deaminase-like | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004126 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009972 | GO:GO:0009987 | GO:GO:0016787 | InterPro:IPR002125 |
| PFAM:PF00383 | PFAM:PF08211 | PIRSF:PIRSF006334 | ScanProsite:PS00903 | PFscan:PS51747 | PANTHER:PTHR11644 |
| PANTHER:PTHR11644:SF2 | SUPFAM:SSF53927 | TIGRFAMs:TIGR01355 | UniParc:UPI00084535AC | EnsemblPlantsGene:Zm00001d011710 | EnsemblPlants:Zm00001d011710_P001 |
| EnsemblPlants:Zm00001d011710_T001 | SEG:seg | : | : | : | : |
Description
Cytidine deaminase 1
Coordinates
chr8:-:159460166..159461104
Molecular Weight (calculated)
31981.2 Da
IEP (calculated)
5.638
GRAVY (calculated)
0.138
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEERAAPKP GPAAATAVEL TGFVMGAEEA ERAAAAAGVA TVQDLLPLLV PSAMERARAP ISRFRVGAVG LGASGRVYAG VNLEFRGLPL CHSVHAEQFL
101: VANAAAAGEP ALRAVAVSHM PCGHCRQFLQ EMRGAAAVQI LVTSDAAEGR APEWRALASL LPRPFGPRDL LPEDVALVLE PHGNDLGGPV ANGFARGDLD
201: ARLREAAEAA ARAAHAPYSK CPSGFAVADG DGRIYAGGCI ESAAYNPTLG PVQAAIIGMV AAGGGPAGDV VAAALVEKER AEVAQEATAR IFLEAVAPRA
301: TFHVYNYRPS DA
101: VANAAAAGEP ALRAVAVSHM PCGHCRQFLQ EMRGAAAVQI LVTSDAAEGR APEWRALASL LPRPFGPRDL LPEDVALVLE PHGNDLGGPV ANGFARGDLD
201: ARLREAAEAA ARAAHAPYSK CPSGFAVADG DGRIYAGGCI ESAAYNPTLG PVQAAIIGMV AAGGGPAGDV VAAALVEKER AEVAQEATAR IFLEAVAPRA
301: TFHVYNYRPS DA
001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A
Arabidopsis Description
CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.