CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60135	Soybean	cytosol	86.64	81.91
KRH49056	Soybean	plastid	61.73	61.51
VIT_11s0016g02340.t01	Wine grape	cytosol	63.18	57.0
CDY30209	Canola	cytosol	58.84	56.21
CDY58323	Canola	cytosol	57.76	54.42
Bra039004.1-P	Field mustard	cytosol	57.04	53.92
Bra024140.1-P	Field mustard	cytosol	59.57	53.75
CDY65102	Canola	cytosol	57.04	53.74
AT2G19570.1	Thale cress	cytosol	57.4	52.82
CDY54276	Canola	cytosol	58.84	52.08
GSMUA_Achr7P24040_001	Banana	cytosol	52.35	51.06
PGSC0003DMT400020044	Potato	cytosol	56.32	48.15
HORVU4Hr1G074340.1	Barley	extracellular, peroxisome	12.27	47.89
HORVU3Hr1G020270.1	Barley	extracellular, peroxisome	12.27	47.89
Solyc07g021750.1.1	Tomato	cytosol	55.96	47.55
GSMUA_Achr3P32380_001	Banana	cytosol	35.02	47.09
Bra024141.1-P	Field mustard	cytosol	47.29	46.95
CDY30210	Canola	cytosol	47.29	46.95
KRH63089	Soybean	cytosol	31.41	46.77
CDY54269	Canola	cytosol	46.93	46.59
HORVU4Hr1G083900.1	Barley	cytosol, mitochondrion, plastid	23.1	46.04
AT4G29630.1	Thale cress	cytosol	36.46	45.29
HORVU3Hr1G067290.1	Barley	cytosol	50.18	44.84
AT4G29610.1	Thale cress	cytosol	47.29	44.71
AT4G29600.1	Thale cress	cytosol	49.46	44.63
AT4G29650.1	Thale cress	cytosol	40.43	44.62
TraesCS3A01G249300.1	Wheat	cytosol	49.1	43.87
TraesCS3B01G278200.1	Wheat	cytosol	49.1	43.87
TraesCS3D01G249300.1	Wheat	cytosol	48.74	43.55
Zm00001d011710_P001	Maize	cytosol, extracellular	48.74	43.27
Os01t0712700-01	Rice	cytosol	48.38	42.95
HORVU4Hr1G036900.1	Barley	cytosol, extracellular, mitochondrion	22.74	42.28
Zm00001d043674_P001	Maize	cytosol	48.01	42.09
EES03512	Sorghum	cytosol	47.65	41.77
Os06t0611600-00	Rice	mitochondrion	30.32	40.0
AT4G29620.1	Thale cress	cytosol	47.65	39.17
CDY54272	Canola	cytosol	38.99	38.71
AT4G29570.1	Thale cress	cytosol	40.07	37.88
AT4G29640.1	Thale cress	cytosol	43.68	34.97
CDY54275	Canola	mitochondrion	36.1	34.97
HORVU5Hr1G075600.1	Barley	mitochondrion	5.42	34.09
HORVU5Hr1G034090.1	Barley	mitochondrion	5.42	34.09
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, golgi	44.04	30.81
AT4G29580.2	Thale cress	nucleus	38.27	23.82
OQU91901	Sorghum	cytosol, plastid	18.41	17.11

Protein Annotations

KEGG:00240+3.5.4.5	KEGG:00983+3.5.4.5	EntrezGene:100780880	Gene3D:3.40.140.10	MapMan:6.2.4.2	EMBL:ACUP02004765
InterPro:APOBEC/CMP_deaminase_Zn-bd	InterPro:CMP_dCMP_dom	InterPro:Cyd/dCyd_deaminase_Zn-bd	InterPro:Cyt_deam_dimer	InterPro:Cytidine_deaminase-like	EnsemblPlantsGene:GLYMA_08G029000
GO:GO:0003674	GO:GO:0003824	GO:GO:0004126	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009972	GO:GO:0009987	GO:GO:0016787	UniProt:I1KPS1
InterPro:IPR002125	EnsemblPlants:KRH41424	ProteinID:KRH41424	ProteinID:KRH41424.1	PFAM:PF00383	PFAM:PF08211
PIRSF:PIRSF006334	ScanProsite:PS00903	PFscan:PS51747	PANTHER:PTHR11644	PANTHER:PTHR11644:SF15	MetaCyc:PWY-6556
MetaCyc:PWY-7181	MetaCyc:PWY-7193	MetaCyc:PWY-7199	SUPFAM:SSF53927	TIGRFAMs:TIGR01355	UniParc:UPI0002338236
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:2318088..2319281

Molecular Weight (calculated)

29511.4 Da

IEP (calculated)

5.948

GRAVY (calculated)

0.163

Length

277 amino acids

Sequence
(BLAST)

001: MDQPSRKFLI SASEALAMAE SAAVTLPELL PTLVPTAQPL APSGRILVGV NLEFPGLPLH HSVHAEQFLI TNLSLNAEPH LVSLAVSAAP CGHCRQFLQE
101: LRAAADVQIL VTSEATAEFG PLSDLLPQRF CPHDLLPLEA PLLLEPHHNT LTLTLHHQHL PNYKLKTAAL EAANKSHAPY SGSPSGVALL DCHGNVFKGS
201: YMESAAFNPS LGPVQAALVA FVSGGGGDYD QIVGAVLVEK EDAVVKQEST ARLLINSISP NCQFDTFLCH CNPNHIV

Best Arabidopsis Sequence Match ( AT2G19570.1 )
(BLAST)

001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A

Arabidopsis Description

CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.