Factsheet for Bra024140.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30209	Canola	cytosol	91.86	97.24
CDY54276	Canola	cytosol	93.81	92.01
Bra039004.1-P	Field mustard	cytosol	71.99	75.43
VIT_11s0016g02340.t01	Wine grape	cytosol	61.24	61.24
KRH60135	Soybean	cytosol	58.31	61.09
HORVU3Hr1G020270.1	Barley	extracellular, peroxisome	14.01	60.56
KRH49056	Soybean	plastid	54.4	60.07
Bra024141.1-P	Field mustard	cytosol	54.4	59.86
KRH41424	Soybean	plasma membrane	53.75	59.57
HORVU4Hr1G074340.1	Barley	extracellular, peroxisome	13.68	59.15
HORVU5Hr1G034090.1	Barley	mitochondrion	8.47	59.09
HORVU5Hr1G075600.1	Barley	mitochondrion	8.47	59.09
GSMUA_Achr7P24040_001	Banana	cytosol	51.14	55.28
GSMUA_Achr3P32380_001	Banana	cytosol	35.5	52.91
HORVU4Hr1G083900.1	Barley	cytosol, mitochondrion, plastid	23.78	52.52
PGSC0003DMT400020044	Potato	cytosol	55.37	52.47
Solyc07g021750.1.1	Tomato	cytosol	54.72	51.53
KRH63089	Soybean	cytosol	30.94	51.08
HORVU3Hr1G067290.1	Barley	cytosol	49.51	49.03
Zm00001d011710_P001	Maize	cytosol, extracellular	49.19	48.4
TraesCS3D01G249300.1	Wheat	cytosol	48.86	48.39
TraesCS3A01G249300.1	Wheat	cytosol	48.86	48.39
TraesCS3B01G278200.1	Wheat	cytosol	48.86	48.39
Os01t0712700-01	Rice	cytosol	48.86	48.08
Zm00001d043674_P001	Maize	cytosol	48.86	47.47
HORVU4Hr1G036900.1	Barley	cytosol, extracellular, mitochondrion	22.8	46.98
EES03512	Sorghum	cytosol	47.23	45.89
Os06t0611600-00	Rice	mitochondrion	30.62	44.76
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, golgi	44.95	34.85
OQU91901	Sorghum	cytosol, plastid	22.48	23.15

Protein Annotations

KEGG:00240+3.5.4.5	KEGG:00983+3.5.4.5	Gene3D:3.40.140.10	MapMan:6.2.4.2	InterPro:APOBEC/CMP_deaminase_Zn-bd	EnsemblPlantsGene:Bra024140
EnsemblPlants:Bra024140.1	EnsemblPlants:Bra024140.1-P	InterPro:CMP_dCMP_dom	InterPro:Cyd/dCyd_deaminase_Zn-bd	InterPro:Cyt_deam_dimer	InterPro:Cytidine_deaminase-like
GO:GO:0003674	GO:GO:0003824	GO:GO:0004126	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009972	GO:GO:0009987	GO:GO:0016787
InterPro:IPR002125	UniProt:M4E5T6	PFAM:PF00383	PFAM:PF08211	PIRSF:PIRSF006334	ScanProsite:PS00903
PFscan:PS51747	PANTHER:PTHR11644	PANTHER:PTHR11644:SF2	SUPFAM:SSF53927	TIGRFAMs:TIGR01355	UniParc:UPI0002540D2D
SEG:seg	:	:	:	:	:

Description

AT2G19570 (E=3e-068) CDA1, AT-CDA1, DESZ | CDA1 (CYTIDINE DEAMINASE 1); cytidine deaminase

Coordinates

chrA03:+:27350927..27351850

Molecular Weight (calculated)

33595.1 Da

IEP (calculated)

6.081

GRAVY (calculated)

-0.115

Length

307 amino acids

Sequence
(BLAST)

001: MDRPSFLIHA EEAESAAKRH GVSVVNLLPL LVNPAKPLAR PPISKFPVSA VGLGSSGRIF VGVNVEFPGL PLHHSIHAEQ FLVTNLTLNS EPNLRHFSVS
101: AAPCGHCRQF LQEIRDAPDI KILITDPNAF RDTVTDKENA VKDENDAVTE KEEDGYVRLE SILPHRFGPN DLLERDVPLL LEPHDNRLTL LGVTNGHVDS
201: DLKLTALTAA NRSYAPYSRC PSGVALVDCE GRVYRGWYME SAAYNPSLGP VQAALVDFVA NGGGGGFERI VGAVLVEKRD AVVRQEHTAR MLLQVIAPKC
301: DFEVFHC

Best Arabidopsis Sequence Match ( AT2G19570.1 )
(BLAST)

001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A

Arabidopsis Description

CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.