CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043674_P001	Maize	cytosol	85.44	85.44
Os01t0712700-01	Rice	cytosol	78.48	79.49
HORVU3Hr1G067290.1	Barley	cytosol	76.58	78.06
TraesCS3A01G249300.1	Wheat	cytosol	75.95	77.42
TraesCS3B01G278200.1	Wheat	cytosol	75.63	77.1
TraesCS3D01G249300.1	Wheat	cytosol	75.0	76.45
HORVU3Hr1G020270.1	Barley	extracellular, peroxisome	16.46	73.24
HORVU4Hr1G074340.1	Barley	extracellular, peroxisome	16.14	71.83
HORVU4Hr1G083900.1	Barley	cytosol, mitochondrion, plastid	30.06	68.35
HORVU5Hr1G075600.1	Barley	mitochondrion	9.18	65.91
HORVU5Hr1G034090.1	Barley	mitochondrion	9.18	65.91
Os06t0611600-00	Rice	mitochondrion	43.35	65.24
HORVU4Hr1G036900.1	Barley	cytosol, extracellular, mitochondrion	29.11	61.74
GSMUA_Achr7P24040_001	Banana	cytosol	53.8	59.86
GSMUA_Achr3P32380_001	Banana	cytosol	37.34	57.28
CDY30209	Canola	cytosol	45.57	49.66
KRH49056	Soybean	plastid	43.04	48.92
CDY58323	Canola	cytosol	44.94	48.3
Bra039004.1-P	Field mustard	cytosol	44.62	48.12
CDY65102	Canola	cytosol	44.62	47.96
KRH41424	Soybean	plasma membrane	41.77	47.65
VIT_11s0016g02340.t01	Wine grape	cytosol	45.89	47.23
Bra024140.1-P	Field mustard	cytosol	45.89	47.23
KRH60135	Soybean	cytosol	43.35	46.76
CDY54276	Canola	cytosol	46.2	46.65
AT2G19570.1	Thale cress	cytosol	43.67	45.85
PGSC0003DMT400020044	Potato	cytosol	46.2	45.06
Solyc07g021750.1.1	Tomato	cytosol	46.2	44.79
CDY30210	Canola	cytosol	38.92	44.09
Bra024141.1-P	Field mustard	cytosol	38.92	44.09
CDY54269	Canola	cytosol	38.29	43.37
KRH63089	Soybean	cytosol	24.68	41.94
AT4G29610.1	Thale cress	cytosol	38.61	41.64
AT4G29630.1	Thale cress	cytosol	29.11	41.26
AT4G29600.1	Thale cress	cytosol	39.87	41.04
AT4G29650.1	Thale cress	cytosol	31.65	39.84
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, golgi	49.37	39.39
AT4G29620.1	Thale cress	cytosol	38.29	35.91
AT4G29570.1	Thale cress	cytosol	32.28	34.81
CDY54272	Canola	cytosol	30.7	34.77
AT4G29640.1	Thale cress	cytosol	36.08	32.95
OQU91901	Sorghum	cytosol, plastid	31.01	32.89
CDY54275	Canola	mitochondrion	27.85	30.77
AT4G29580.2	Thale cress	nucleus	29.75	21.12

Protein Annotations

KEGG:00240+3.5.4.5	KEGG:00983+3.5.4.5	Gene3D:3.40.140.10	MapMan:6.2.4.2	EntrezGene:8069781	InterPro:APOBEC/CMP_deaminase_Zn-bd
UniProt:C5XI87	InterPro:CMP_dCMP_dom	InterPro:Cyd/dCyd_deaminase_Zn-bd	InterPro:Cytidine_deaminase-like	EnsemblPlants:EES03512	ProteinID:EES03512
ProteinID:EES03512.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004126	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009972	GO:GO:0009987	GO:GO:0010277
GO:GO:0016787	GO:GO:0055114	InterPro:IPR002125	PFAM:PF00383	PFAM:PF08211	PIRSF:PIRSF006334
ScanProsite:PS00903	PFscan:PS51747	PANTHER:PTHR11644	PANTHER:PTHR11644:SF2	MetaCyc:PWY-6556	MetaCyc:PWY-7181
MetaCyc:PWY-7193	MetaCyc:PWY-7199	EnsemblPlantsGene:SORBI_3003G275300	SUPFAM:SSF53927	unigene:Sbi.3472	UniParc:UPI0001A84C1E
RefSeq:XP_002458392.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:61135991..61146995

Molecular Weight (calculated)

32364.4 Da

IEP (calculated)

4.886

GRAVY (calculated)

0.185

Length

316 amino acids

Sequence
(BLAST)

001: MGEEQAAPKP AEAAAAALEL TGFVMSAEDA ERRAAAAGVA TVQDLLPLLI PSARKRAQVP ISDFQVGAVG LGASGRVYVG VNLEFRGVPL CHSVHAEQFL
101: VANAAAAGES ALRAVAVSHM PCGHCRQFLQ EIRGAAGIQI LVTSDAEQGR APEWRTVASL LLRPFGPHDL LDENVPLVLE AHDNALGDPV VAAAANGFAP
201: GDLDARLRDA AEAAARAAHA PYSQCPSGFA VADGDGRIYA GGCLESAAYN PTLGPVQAAI IAMVAAGGGP AGDVVAAALV EKEQAAVAQE ATARIFLDAM
301: APHASFHVYK YRPSDA

Best Arabidopsis Sequence Match ( AT2G19570.1 )
(BLAST)

001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A

Arabidopsis Description

CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.