CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024141.1-P	Field mustard	cytosol	100.0	100.0
CDY54269	Canola	cytosol	95.7	95.7
CDY30209	Canola	cytosol	59.14	56.9
AT4G29610.1	Thale cress	cytosol	57.71	54.95
CDY58323	Canola	cytosol	57.71	54.76
CDY65102	Canola	cytosol	57.71	54.76
CDY54276	Canola	cytosol	59.86	53.35
AT4G29600.1	Thale cress	cytosol	56.99	51.79
HORVU3Hr1G020270.1	Barley	extracellular, peroxisome	12.9	50.7
AT4G29650.1	Thale cress	cytosol	44.44	49.4
HORVU4Hr1G074340.1	Barley	extracellular, peroxisome	12.54	49.3
VIT_11s0016g02340.t01	Wine grape	cytosol	53.05	48.21
KRH49056	Soybean	plastid	47.67	47.84
KRH41424	Soybean	plasma membrane	46.95	47.29
AT4G29630.1	Thale cress	cytosol	37.28	46.64
HORVU5Hr1G075600.1	Barley	mitochondrion	7.17	45.45
HORVU5Hr1G034090.1	Barley	mitochondrion	7.17	45.45
KRH60135	Soybean	cytosol	47.67	45.39
AT4G29620.1	Thale cress	cytosol	54.48	45.1
CDY54272	Canola	cytosol	44.09	44.09
GSMUA_Achr7P24040_001	Banana	cytosol	44.8	44.01
HORVU4Hr1G083900.1	Barley	cytosol, mitochondrion, plastid	21.86	43.88
PGSC0003DMT400020044	Potato	cytosol	50.54	43.52
Solyc07g021750.1.1	Tomato	cytosol	49.46	42.33
HORVU4Hr1G036900.1	Barley	cytosol, extracellular, mitochondrion	21.86	40.94
CDY54275	Canola	mitochondrion	41.58	40.56
AT4G29640.1	Thale cress	cytosol	50.18	40.46
Zm00001d011710_P001	Maize	cytosol, extracellular	44.8	40.06
Os01t0712700-01	Rice	cytosol	44.44	39.74
Zm00001d043674_P001	Maize	cytosol	44.8	39.56
HORVU3Hr1G067290.1	Barley	cytosol	43.73	39.35
TraesCS3B01G278200.1	Wheat	cytosol	43.37	39.03
EES03512	Sorghum	cytosol	44.09	38.92
TraesCS3A01G249300.1	Wheat	cytosol	42.65	38.39
TraesCS3D01G249300.1	Wheat	cytosol	42.65	38.39
GSMUA_Achr3P32380_001	Banana	cytosol	27.24	36.89
KRH63089	Soybean	cytosol	24.37	36.56
Os06t0611600-00	Rice	mitochondrion	26.88	35.71
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, golgi	37.63	26.52
OQU91901	Sorghum	cytosol, plastid	19.71	18.46

Protein Annotations

KEGG:00240+3.5.4.5	KEGG:00983+3.5.4.5	Gene3D:3.40.140.10	MapMan:6.2.4.2	GO:A0A078GUM9	UniProt:A0A078GUM9
InterPro:APOBEC/CMP_deaminase_Zn-bd	EnsemblPlants:CDY30210	ProteinID:CDY30210	ProteinID:CDY30210.1	InterPro:CMP_dCMP_dom	InterPro:Cyd/dCyd_deaminase_Zn-bd
InterPro:Cyt_deam_dimer	InterPro:Cytidine_deaminase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0004126	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009972
GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00044817001	InterPro:IPR002125	PFAM:PF00383	PFAM:PF08211
PIRSF:PIRSF006334	ScanProsite:PS00903	PFscan:PS51747	PANTHER:PTHR11644	PANTHER:PTHR11644:SF15	MetaCyc:PWY-6556
MetaCyc:PWY-7181	MetaCyc:PWY-7193	MetaCyc:PWY-7199	SUPFAM:SSF53927	TIGRFAMs:TIGR01355	UniParc:UPI0002540CC9
SEG:seg	:	:	:	:	:

Description

BnaA03g49600DBnaA03g49600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUM9]

Coordinates

chrLK032250:-:306788..307627

Molecular Weight (calculated)

30591.3 Da

IEP (calculated)

7.047

GRAVY (calculated)

0.175

Length

279 amino acids

Sequence
(BLAST)

001: MAQPSKFVLI NEPYGVVSDP MDLVSLIDRK VSLRMAPISG RHVGAVGLGF SRKVFLGINV ELPGLPLHHS IHAEQFLVIN LMLNSEQHLT HLAVSSSDSV
101: FHAPCGHCRQ FLQEITEASI IQVLIKDPAL GIQEFVTLKS LLPRHSNLLP DLLQARDNKL LLVSSEGCED RLLLRTALAA ANRSFAPYSK CPSGVALKDR
201: EGQVYRGWYI ESAAYNPSLG PVQAALVDFV ISGGTKFEDI VEAVLVEKRD AVVSQEKTAK MILETIADPK CAFKVFHCI

Best Arabidopsis Sequence Match ( AT4G29570.1 )
(BLAST)

001: MAQPMRFMLN HIETESYGAF TPQNLSPLIN RAIPHTRAQI SGSPVVAVGR GSSGRTFFGV NVELPGLPLD HSIHAEQFLL ANLALHFEQK LECIAISTNG
101: YYFQEPCGHC CQLLHKIRDM SDTKILLTNP TGQKGTYMNL STFLPQGLIS QANVPRLLER NFNCIELINH SLYMDICSYS EHCNHLNCRA LKAATISYAP
201: DSKCPSGVAL IDHRGKVYSG GYMESVAHNT SLGPVQAALV DFVANGDGQE FKNIVEAVLV EKKCGVLSQE ATARMILEKI ADPDCIFRVL HCK

Arabidopsis Description

CDA8Cytidine deaminase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEX4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.