Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024140.1-P | Field mustard | cytosol | 97.24 | 91.86 |
| CDY54276 | Canola | cytosol | 97.93 | 90.73 |
| CDY58323 | Canola | cytosol | 78.28 | 77.21 |
| CDY65102 | Canola | cytosol | 77.59 | 76.53 |
| VIT_11s0016g02340.t01 | Wine grape | cytosol | 64.83 | 61.24 |
| HORVU3Hr1G020270.1 | Barley | extracellular, peroxisome | 14.83 | 60.56 |
| KRH60135 | Soybean | cytosol | 61.03 | 60.41 |
| KRH49056 | Soybean | plastid | 57.24 | 59.71 |
| HORVU4Hr1G074340.1 | Barley | extracellular, peroxisome | 14.48 | 59.15 |
| CDY30210 | Canola | cytosol | 56.9 | 59.14 |
| HORVU5Hr1G034090.1 | Barley | mitochondrion | 8.97 | 59.09 |
| HORVU5Hr1G075600.1 | Barley | mitochondrion | 8.97 | 59.09 |
| KRH41424 | Soybean | plasma membrane | 56.21 | 58.84 |
| CDY54269 | Canola | cytosol | 56.21 | 58.42 |
| GSMUA_Achr7P24040_001 | Banana | cytosol | 54.48 | 55.63 |
| GSMUA_Achr3P32380_001 | Banana | cytosol | 38.28 | 53.88 |
| PGSC0003DMT400020044 | Potato | cytosol | 58.28 | 52.16 |
| HORVU4Hr1G083900.1 | Barley | cytosol, mitochondrion, plastid | 24.83 | 51.8 |
| Solyc07g021750.1.1 | Tomato | cytosol | 57.59 | 51.23 |
| KRH63089 | Soybean | cytosol | 32.76 | 51.08 |
| HORVU3Hr1G067290.1 | Barley | cytosol | 52.07 | 48.71 |
| Zm00001d011710_P001 | Maize | cytosol, extracellular | 51.72 | 48.08 |
| TraesCS3D01G249300.1 | Wheat | cytosol | 51.38 | 48.06 |
| TraesCS3B01G278200.1 | Wheat | cytosol | 51.38 | 48.06 |
| TraesCS3A01G249300.1 | Wheat | cytosol | 51.38 | 48.06 |
| Os01t0712700-01 | Rice | cytosol | 51.38 | 47.76 |
| Zm00001d043674_P001 | Maize | cytosol | 51.38 | 47.15 |
| HORVU4Hr1G036900.1 | Barley | cytosol, extracellular, mitochondrion | 23.79 | 46.31 |
| EES03512 | Sorghum | cytosol | 49.66 | 45.57 |
| CDY54272 | Canola | cytosol | 43.1 | 44.8 |
| Os06t0611600-00 | Rice | mitochondrion | 32.41 | 44.76 |
| CDY54275 | Canola | mitochondrion | 40.69 | 41.26 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, golgi | 47.59 | 34.85 |
| OQU91901 | Sorghum | cytosol, plastid | 23.1 | 22.48 |
Protein Annotations
| KEGG:00240+3.5.4.5 | KEGG:00983+3.5.4.5 | Gene3D:3.40.140.10 | MapMan:6.2.4.2 | GO:A0A078GYI3 | UniProt:A0A078GYI3 |
| InterPro:APOBEC/CMP_deaminase_Zn-bd | EnsemblPlants:CDY30209 | ProteinID:CDY30209 | ProteinID:CDY30209.1 | InterPro:CMP_dCMP_dom | InterPro:Cyd/dCyd_deaminase_Zn-bd |
| InterPro:Cyt_deam_dimer | InterPro:Cytidine_deaminase-like | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004126 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009972 |
| GO:GO:0009987 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00044816001 | InterPro:IPR002125 | PFAM:PF00383 | PFAM:PF08211 |
| PIRSF:PIRSF006334 | ScanProsite:PS00903 | PFscan:PS51747 | PANTHER:PTHR11644 | PANTHER:PTHR11644:SF2 | MetaCyc:PWY-6556 |
| MetaCyc:PWY-7181 | MetaCyc:PWY-7193 | MetaCyc:PWY-7199 | SUPFAM:SSF53927 | TIGRFAMs:TIGR01355 | UniParc:UPI0004EDC796 |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g49610DBnaA03g49610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYI3]
Coordinates
chrLK032250:-:304901..306045
Molecular Weight (calculated)
31708.1 Da
IEP (calculated)
6.644
GRAVY (calculated)
-0.056
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRPSFLIHA EEAESAAKRH GVSVVNLLPL LVNPAKPLAR PPISKFPVSA VGLGSSGRIF VGVNVEFPGL PLHHSIHAEQ FLVTNLTLNS EPNLRHFSVS
101: AAPCGHCRQF LQEIRDAPDI KILITDPNAF RDAKEEDGYV RLESILPHRF GPNDLLERDV PLLLEPHDNR LTLLGVTNGH VDSDLKLTAL SAANRSYAPY
201: SRCPSGVALV DCEGRVYRGW YMESAAYNPS LGPVQAALVD YVANGGGGGF ERIVGAVLVE KRDAVVRQEH TARMLLQVIA PKCDFEVFHC
101: AAPCGHCRQF LQEIRDAPDI KILITDPNAF RDAKEEDGYV RLESILPHRF GPNDLLERDV PLLLEPHDNR LTLLGVTNGH VDSDLKLTAL SAANRSYAPY
201: SRCPSGVALV DCEGRVYRGW YMESAAYNPS LGPVQAALVD YVANGGGGGF ERIVGAVLVE KRDAVVRQEH TARMLLQVIA PKCDFEVFHC
001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A
Arabidopsis Description
CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.