Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 11
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
22908117
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400061915 | Potato | cytosol, plastid | 93.68 | 95.88 |
| CDY14949 | Canola | cytosol | 47.13 | 71.3 |
| Os01t0963400-01 | Rice | cytosol | 45.98 | 65.57 |
| HORVU7Hr1G010470.2 | Barley | cytosol | 27.59 | 64.86 |
| VIT_18s0072g00400.t01 | Wine grape | plastid | 61.49 | 61.14 |
| AT1G76760.1 | Thale cress | plastid | 60.34 | 61.05 |
| AT1G43560.1 | Thale cress | plastid | 58.05 | 60.48 |
| Bra015721.1-P | Field mustard | plastid | 59.77 | 60.47 |
| CDX88314 | Canola | plastid | 59.2 | 59.88 |
| HORVU2Hr1G087710.1 | Barley | cytosol | 28.16 | 59.76 |
| CDX87569 | Canola | plastid | 58.62 | 59.3 |
| KRH35133 | Soybean | plastid | 58.05 | 57.71 |
| KRG91663 | Soybean | plastid | 57.47 | 57.14 |
| GSMUA_Achr6P25720_001 | Banana | plastid | 53.45 | 54.71 |
| EES02107 | Sorghum | plastid | 52.3 | 53.22 |
| Zm00001d042017_P002 | Maize | plastid | 50.0 | 52.1 |
| GSMUA_Achr1P13230_001 | Banana | extracellular | 39.66 | 51.11 |
| TraesCS3B01G577800.1 | Wheat | plastid | 47.13 | 50.0 |
| TraesCS3A01G509000.1 | Wheat | plastid | 47.13 | 49.7 |
| TraesCS3D01G516800.1 | Wheat | plastid | 47.13 | 49.7 |
| HORVU5Hr1G116290.1 | Barley | plastid | 32.18 | 40.29 |
| HORVU3Hr1G111930.2 | Barley | plastid | 47.13 | 39.61 |
| Solyc01g008250.2.1 | Tomato | plastid | 27.59 | 26.37 |
| Solyc12g013810.1.1 | Tomato | plastid | 24.71 | 24.02 |
| Solyc10g006970.2.1 | Tomato | plastid | 24.14 | 22.46 |
| Solyc07g063190.2.1 | Tomato | plastid | 22.99 | 21.98 |
| Solyc01g108020.2.1 | Tomato | plastid | 22.41 | 21.67 |
| Solyc10g008390.2.1 | Tomato | plastid | 18.97 | 18.03 |
Protein Annotations
| MapMan:10.5.8 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006662 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0016671 | GO:GO:0019725 | GO:GO:0034599 |
| GO:GO:0045454 | GO:GO:0047134 | GO:GO:0055114 | GO:GO:0098869 | InterPro:IPR013766 | UniProt:K4BTE8 |
| PFAM:PF00085 | PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF280 |
| SUPFAM:SSF52833 | EnsemblPlantsGene:Solyc04g071560.2 | EnsemblPlants:Solyc04g071560.2.1 | TIGRFAMs:TIGR01068 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0002766A0F | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4:+:58540495..58543938
Molecular Weight (calculated)
19054.1 Da
IEP (calculated)
9.123
GRAVY (calculated)
-0.131
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFSIAAAGA ATGAGALASP SANGSSSTKF SYLASLQFPR ELRRVQIGNY GLKSKKGSSR LVPLVEAKKQ TFSSFEDMLE NSEKPLLVDF YATWCGPCQF
101: MVPILNEVGE SMKDKIQVVK IDTEKYPALA DKYKIQALPT FILFKDGDVC DRFEGALNAP QLMQRIKSAL EVKQ
101: MVPILNEVGE SMKDKIQVVK IDTEKYPALA DKYKIQALPT FILFKDGDVC DRFEGALNAP QLMQRIKSAL EVKQ
001: MASISLSSST VPSLNSKESS GVSAFASRSI SAVKFQFPVR RVRTGDLKFP SLSSTTRCTP RRIEAKKQTF DSFEDLLVNS DKPVLVDYYA TWCGPCQFMV
101: PILNEVSETL KDKIQVVKID TEKYPSIANK YKIEALPTFI LFKDGEPCDR FEGALTAKQL IQRIEDSLKV KP
101: PILNEVSETL KDKIQVVKID TEKYPSIANK YKIEALPTFI LFKDGEPCDR FEGALTAKQL IQRIEDSLKV KP
Arabidopsis Description
ATY1TY1 [Source:UniProtKB/TrEMBL;Acc:A0A178WE50]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.