Factsheet for Solyc04g008280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, unclear, extracellular, cytosol

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

unclear: 26455813
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075872	Potato	cytosol	66.14	100.0
KRH00921	Soybean	cytosol	60.16	90.96
KRH40302	Soybean	cytosol, nucleus	60.16	90.96
TraesCS7A01G558300.1	Wheat	cytosol, extracellular	58.17	86.9
GSMUA_Achr4P11830_001	Banana	cytosol	57.77	86.31
TraesCS7B01G483200.1	Wheat	cytosol	57.37	85.71
TraesCS7D01G551700.1	Wheat	cytosol	57.37	85.71
GSMUA_Achr4P05260_001	Banana	cytosol	49.8	85.62
AT5G16450.1	Thale cress	cytosol	56.18	84.94
CDY69168	Canola	cytosol	56.18	84.94
CDY53745	Canola	cytosol	56.18	84.94
CDX74237	Canola	cytosol	56.18	84.94
Bra021412.1-P	Field mustard	cytosol	56.18	84.94
Bra001062.1-P	Field mustard	cytosol	56.18	84.94
GSMUA_Achr3P14020_001	Banana	cytosol	56.57	84.52
Os02t0761900-01	Rice	cytosol, extracellular, plasma membrane, plastid	56.57	84.52
AT3G02770.1	Thale cress	cytosol	55.38	83.73
CDX92011	Canola	cytosol	55.38	83.73
CDX78691	Canola	cytosol	55.38	83.73
CDX70694	Canola	cytosol	55.38	83.73
Zm00001d014883_P001	Maize	cytosol, extracellular, mitochondrion	55.78	83.33
Bra006355.1-P	Field mustard	cytosol	54.98	83.13
VIT_04s0023g00590.t01	Wine grape	cytosol	61.75	78.28
Os02t0762100-01	Rice	cytosol, plasma membrane	51.0	76.19
Zm00001d039841_P001	Maize	extracellular	51.0	76.19
EES02468	Sorghum	cytosol	50.6	75.6
TraesCS7A01G558200.1	Wheat	cytosol, plastid	50.2	75.0
HORVU1Hr1G045180.2	Barley	cytosol	19.12	75.0
HORVU1Hr1G058220.1	Barley	cytosol	15.54	75.0
Solyc10g005670.1.1	Tomato	plastid	27.09	73.91
TraesCS7B01G483100.1	Wheat	cytosol	49.0	73.21
TraesCS7D01G551600.1	Wheat	cytosol, unclear	49.0	73.21
HORVU5Hr1G024120.1	Barley	cytosol	26.29	71.74
TraesCS7D01G552200.1	Wheat	cytosol	47.81	71.43
HORVU1Hr1G010560.1	Barley	cytosol	17.53	68.75
HORVU1Hr1G040320.1	Barley	cytosol	23.51	67.05
HORVU3Hr1G024340.2	Barley	cytosol	25.5	62.14
HORVU3Hr1G110300.1	Barley	cytosol	26.69	59.29
HORVU7Hr1G120490.20	Barley	plastid	58.17	53.87
KXG31862	Sorghum	cytosol	37.85	53.37
HORVU3Hr1G042110.1	Barley	mitochondrion	21.51	52.94
CDX96297	Canola	cytosol	16.33	50.0
HORVU5Hr1G074130.1	Barley	cytosol	28.69	48.32

Protein Annotations

Gene3D:3.50.30.40	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008428	GO:GO:0008948	GO:GO:0009987	GO:GO:0016829
GO:GO:0030234	GO:GO:0043086	GO:GO:0046872	GO:GO:0047443	GO:GO:0051252	UniProt:K4BNY4
PFAM:PF03737	PANTHER:PTHR33254	PANTHER:PTHR33254:SF13	InterPro:RraA	InterPro:RraA/RraA-like	InterPro:RraA/RraA-like_sf
SUPFAM:SSF89562	EnsemblPlantsGene:Solyc04g008280.2	EnsemblPlants:Solyc04g008280.2.1	TIGRFAMs:TIGR01935	UniParc:UPI0002766F61	:

Description

4-hydroxy-4-methyl-2-oxoglutarate aldolase [Source:UniProtKB/TrEMBL;Acc:K4BNY4]

Coordinates

chr4:+:1954623..1957620

Molecular Weight (calculated)

27783.0 Da

IEP (calculated)

9.438

GRAVY (calculated)

-0.001

Length

251 amino acids

Sequence
(BLAST)

001: MSYSKGQVVL MLSSDNRHSN SDILSILYRK KTKILLRRHV VLQWLFLRGK KLYYSLQRST SDPDLFFSSS PTFKQVSKNL LHLHQMALVT TAEVCDANPQ
101: LIVSGELRAL QPIFKIYGRR QVFSGPVVTL KVFEDNVLVR EFLEEKGNGR VLVVDGGGSL RCAILGGNPV VQAQNNGWAG IVVNGCVRDV DEINGCDIGV
201: RALASHPMKA NKKGIGEKHV PITIAGTRIC DGEWLYADTD GILISKMELC V

Best Arabidopsis Sequence Match ( AT5G16450.2 )
(BLAST)

001: MAFVTTAEVC DANQELIRSG QLRALQPIFQ IYGRRQIFSG PVVTVKVFED NGLIRQFIEE KGNGRVLVVD GGGSQRCAIL GGNPVVQAQN NGWAGIVVNG
101: CIRDVDEING CDIGVRALAS HPIKASKKGL GEQRVPVNIA GTRICDGEWL YADTDGILVS QIELSV

Arabidopsis Description

Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.