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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • nucleus 1
  • mitochondrion 3
  • cytosol 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:secretory
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol, plasma membrane, plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:extracellular
YLoc:cytosol
 plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra002829.1-P Field mustard cytosol 50.0 61.33
CDY32800 Canola cytosol 50.0 61.33
CDY62102 Canola cytosol 53.26 55.06
PGSC0003DMT400029207 Potato cytosol 97.83 54.22
PGSC0003DMT400090515 Potato cytosol 92.39 47.49
VIT_19s0015g01900.t01 Wine grape cytosol 83.7 46.39
CDY20739 Canola cytosol 80.43 44.58
GSMUA_Achr1P09370_001 Banana cytosol 80.43 44.58
Bra035612.1-P Field mustard cytosol 80.43 44.58
CDY11948 Canola cytosol 79.35 43.98
CDY36787 Canola cytosol 79.35 43.98
CDY06513 Canola cytosol 79.35 43.98
Bra028940.1-P Field mustard cytosol 79.35 43.98
AT5G56260.4 Thale cress extracellular 79.35 36.87
KRH21645 Soybean mitochondrion 78.26 35.47
KRH10689 Soybean extracellular, plasma membrane, plastid 76.09 33.33
Solyc04g008280.2.1 Tomato cytosol, endoplasmic reticulum, extracellular, unclear 73.91 27.09
Protein Annotations
EnsemblPlants:Solyc10g005670.1.1EnsemblPlantsGene:Solyc10g005670.1Gene3D:3.50.30.40InterPro:RraA/RraA-likeInterPro:RraA/RraA-like_sfPANTHER:PTHR33254
PANTHER:PTHR33254:SF3PFAM:PF03737SUPFAM:SSF89562UniParc:UPI000276C96AUniProt:K4CX99MapMan:35.1
Description
No Description!
Coordinates
chr10:-:542275..542553
Molecular Weight (calculated)
9870.0 Da
IEP (calculated)
6.496
GRAVY (calculated)
-0.068
Length
92 amino acids
Sequence
(BLAST)
1: MRCALVGGNL GQLAQNMGWA GILVNGCIRD VDEINGCDIG VRALASHPQK SNKKGQGEKH VPIYIGGMMI REGEWLYADS DGILVSKTEL SI
Best Arabidopsis Sequence Match ( AT5G56260.4 )
(BLAST)
001: MFTLFCYFHF FLSVPYSYLS CDSKCRTHTE SPMAAFATAE ACDSNAELIS NGDLRALHPI FKIYGQRRCF SGPIVTLKVF EDNVLVRNQL ETKGEGGVLV
101: IDGGGSMRCA LVGGNLGQLA QNNGWSGIVV NGCVRDVDEI NDCDVGVRAL GSNPLKSTKK GHGEKNVPVH IGGTLIRDGE WLYADSDGIL ISKTELSV
Arabidopsis Description
Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [Source:TAIR;Acc:AT5G56260]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.