Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035612.1-P | Field mustard | cytosol | 98.19 | 98.19 |
| CDY20739 | Canola | cytosol | 97.59 | 97.59 |
| CDY36787 | Canola | cytosol | 95.18 | 95.18 |
| CDY11948 | Canola | cytosol | 94.58 | 94.58 |
| Solyc10g005670.1.1 | Tomato | plastid | 43.98 | 79.35 |
| AT5G56260.4 | Thale cress | extracellular | 94.58 | 79.29 |
| VIT_19s0015g01900.t01 | Wine grape | cytosol | 78.31 | 78.31 |
| PGSC0003DMT400029207 | Potato | cytosol | 77.71 | 77.71 |
| CDY32800 | Canola | cytosol | 34.34 | 76.0 |
| GSMUA_Achr1P09370_001 | Banana | cytosol | 72.89 | 72.89 |
| CDY62102 | Canola | cytosol | 37.35 | 69.66 |
| CDY53745 | Canola | cytosol | 67.47 | 67.47 |
| CDX74237 | Canola | cytosol | 67.47 | 67.47 |
| CDY69168 | Canola | cytosol | 67.47 | 67.47 |
| CDX70694 | Canola | cytosol | 67.47 | 67.47 |
| CDX78691 | Canola | cytosol | 67.47 | 67.47 |
| CDX92011 | Canola | cytosol | 66.87 | 66.87 |
| PGSC0003DMT400090515 | Potato | cytosol | 63.86 | 59.22 |
| KRH21645 | Soybean | mitochondrion | 71.69 | 58.62 |
| KRH10689 | Soybean | extracellular, plasma membrane, plastid | 72.89 | 57.62 |
| CDX96297 | Canola | cytosol | 22.29 | 45.12 |
Protein Annotations
| Gene3D:3.50.30.40 | MapMan:35.1 | GO:A0A078F4B1 | EnsemblPlants:CDY06513 | ProteinID:CDY06513 | ProteinID:CDY06513.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008428 |
| GO:GO:0008948 | GO:GO:0009987 | GO:GO:0030234 | GO:GO:0047443 | GO:GO:0051252 | EnsemblPlantsGene:GSBRNA2T00122620001 |
| PFAM:PF03737 | PANTHER:PTHR33254 | PANTHER:PTHR33254:SF3 | InterPro:RraA | InterPro:RraA/RraA-like | InterPro:RraA/RraA-like_sf |
| SUPFAM:SSF89562 | TIGRFAMs:TIGR01935 | UniParc:UPI0004EE473B | SEG:seg | : | : |
Description
BnaC02g12370D
Coordinates
chrLK031971:+:8300..9954
Molecular Weight (calculated)
17646.1 Da
IEP (calculated)
4.950
GRAVY (calculated)
-0.086
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAFPTAEAC DSNAELIANG DLRALHPIFN IYGQRRCFSG PIVTLKVFED NVLVRNQLET KGEGQVLVID GGGSKRCALV GGNLGQLAQN NGWAGIVVNG
101: CVRDVDEIND CDVGVRALGS NPLKSSKKGH GEKNVPVYMG GTLIRDGEWL YADSDGILIS KTELSV
101: CVRDVDEIND CDVGVRALGS NPLKSSKKGH GEKNVPVYMG GTLIRDGEWL YADSDGILIS KTELSV
001: MFTLFCYFHF FLSVPYSYLS CDSKCRTHTE SPMAAFATAE ACDSNAELIS NGDLRALHPI FKIYGQRRCF SGPIVTLKVF EDNVLVRNQL ETKGEGGVLV
101: IDGGGSMRCA LVGGNLGQLA QNNGWSGIVV NGCVRDVDEI NDCDVGVRAL GSNPLKSTKK GHGEKNVPVH IGGTLIRDGE WLYADSDGIL ISKTELSV
101: IDGGGSMRCA LVGGNLGQLA QNNGWSGIVV NGCVRDVDEI NDCDVGVRAL GSNPLKSTKK GHGEKNVPVH IGGTLIRDGE WLYADSDGIL ISKTELSV
Arabidopsis Description
Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [Source:TAIR;Acc:AT5G56260]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.