Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- nucleus 1
- plastid 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028940.1-P | Field mustard | cytosol | 81.82 | 97.59 |
| CDY36787 | Canola | cytosol | 81.82 | 97.59 |
| CDY11948 | Canola | cytosol | 81.31 | 96.99 |
| Bra035612.1-P | Field mustard | cytosol | 80.3 | 95.78 |
| CDY20739 | Canola | cytosol | 79.8 | 95.18 |
| CDY06513 | Canola | cytosol | 79.29 | 94.58 |
| PGSC0003DMT400029207 | Potato | cytosol | 66.67 | 79.52 |
| Solyc10g005670.1.1 | Tomato | plastid | 36.87 | 79.35 |
| VIT_19s0015g01900.t01 | Wine grape | cytosol | 66.16 | 78.92 |
| GSMUA_Achr1P09370_001 | Banana | cytosol | 61.62 | 73.49 |
| AT5G16450.1 | Thale cress | cytosol | 57.58 | 68.67 |
| AT3G02770.1 | Thale cress | cytosol | 55.56 | 66.27 |
| PGSC0003DMT400090515 | Potato | cytosol | 54.55 | 60.34 |
| KRH10689 | Soybean | extracellular, plasma membrane, plastid | 62.63 | 59.05 |
| KRH21645 | Soybean | mitochondrion | 60.1 | 58.62 |
Protein Annotations
| Gene3D:3.50.30.40 | MapMan:35.1 | EntrezGene:835725 | UniProt:A0A1P8BCQ5 | ProteinID:AED96742.1 | ProteinID:ANM69379.1 |
| ProteinID:ANM69380.1 | ProteinID:ANM69381.1 | ProteinID:ANM69382.1 | ArrayExpress:AT5G56260 | EnsemblPlantsGene:AT5G56260 | RefSeq:AT5G56260 |
| TAIR:AT5G56260 | RefSeq:AT5G56260-TAIR-G | EnsemblPlants:AT5G56260.4 | ProteinID:BAB09117.1 | EMBL:BT010892 | EMBL:BT010934 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008168 | GO:GO:0008428 | GO:GO:0008948 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016829 |
| GO:GO:0030234 | GO:GO:0032259 | GO:GO:0043086 | GO:GO:0046872 | GO:GO:0047443 | GO:GO:0051252 |
| RefSeq:NP_001331061.1 | RefSeq:NP_001331062.1 | RefSeq:NP_001331063.1 | RefSeq:NP_001331064.1 | RefSeq:NP_200437.1 | ProteinID:OAO89975.1 |
| PFAM:PF03737 | PANTHER:PTHR33254 | PANTHER:PTHR33254:SF3 | InterPro:RraA | InterPro:RraA/RraA-like | InterPro:RraA/RraA-like_sf |
| SUPFAM:SSF89562 | SignalP:SignalP-noTM | TIGRFAMs:TIGR01935 | UniParc:UPI000848C221 | SEG:seg | : |
Description
Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [Source:TAIR;Acc:AT5G56260]
Coordinates
chr5:-:22775206..22777336
Molecular Weight (calculated)
21408.6 Da
IEP (calculated)
5.997
GRAVY (calculated)
-0.014
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MFTLFCYFHF FLSVPYSYLS CDSKCRTHTE SPMAAFATAE ACDSNAELIS NGDLRALHPI FKIYGQRRCF SGPIVTLKVF EDNVLVRNQL ETKGEGGVLV
101: IDGGGSMRCA LVGGNLGQLA QNNGWSGIVV NGCVRDVDEI NDCDVGVRAL GSNPLKSTKK GHGEKNVPVH IGGTLIRDGE WLYADSDGIL ISKTELSV
101: IDGGGSMRCA LVGGNLGQLA QNNGWSGIVV NGCVRDVDEI NDCDVGVRAL GSNPLKSTKK GHGEKNVPVH IGGTLIRDGE WLYADSDGIL ISKTELSV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.