Factsheet for VIT_19s0015g01900.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029207	Potato	cytosol	84.94	84.94
Solyc10g005670.1.1	Tomato	plastid	46.39	83.7
CDY20739	Canola	cytosol	80.72	80.72
Bra035612.1-P	Field mustard	cytosol	79.52	79.52
Bra028940.1-P	Field mustard	cytosol	78.92	78.92
CDY36787	Canola	cytosol	78.92	78.92
GSMUA_Achr1P09370_001	Banana	cytosol	78.92	78.92
CDY06513	Canola	cytosol	78.31	78.31
CDY11948	Canola	cytosol	78.31	78.31
AT5G56260.4	Thale cress	extracellular	78.92	66.16
PGSC0003DMT400090515	Potato	cytosol	68.67	63.69
Bra002829.1-P	Field mustard	cytosol	27.71	61.33
CDY32800	Canola	cytosol	27.71	61.33
VIT_04s0023g00590.t01	Wine grape	cytosol	72.29	60.61
KRH21645	Soybean	mitochondrion	73.49	60.1
KRH10689	Soybean	extracellular, plasma membrane, plastid	73.49	58.1
CDY62102	Canola	cytosol	30.12	56.18

Protein Annotations

EntrezGene:100256628	wikigene:100256628	Gene3D:3.50.30.40	MapMan:35.1	EMBL:AM483029	ProteinID:CAN79693
ProteinID:CAN79693.1	ProteinID:CBI39867	ProteinID:CBI39867.3	UniProt:D7UAV2	EMBL:FN596747	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008428
GO:GO:0008948	GO:GO:0009987	GO:GO:0016829	GO:GO:0030234	GO:GO:0043086	GO:GO:0046872
GO:GO:0047443	GO:GO:0051252	EntrezGene:LOC100256628	wikigene:LOC100256628	PFAM:PF03737	PANTHER:PTHR33254
PANTHER:PTHR33254:SF3	InterPro:RraA	InterPro:RraA/RraA-like	InterPro:RraA/RraA-like_sf	SUPFAM:SSF89562	TIGR:TC56488
TIGRFAMs:TIGR01935	UniParc:UPI00019859BA	ArrayExpress:VIT_19s0015g01900	EnsemblPlantsGene:VIT_19s0015g01900	EnsemblPlants:VIT_19s0015g01900.t01	unigene:Vvi.11700
RefSeq:XP_002265968	RefSeq:XP_002265968.1	RefSeq:XP_010644701.1	:	:	:

Description

4-hydroxy-4-methyl-2-oxoglutarate aldolase [Source:UniProtKB/TrEMBL;Acc:D7UAV2]

Coordinates

chr19:+:10691570..10693958

Molecular Weight (calculated)

17628.4 Da

IEP (calculated)

5.674

GRAVY (calculated)

0.199

Length

166 amino acids

Sequence
(BLAST)

001: MAALATAEVC DSNAAHLTSG DLRVLQPIFQ SYGQCRAFSG PIVTLKVFED NVLVRALLET RGEGRVLVID GGGSMRCALV GGNIGQLAQN MGWAGIVVNG
101: CIRDVDEIKD CDIGVRALGA HPMKSNKKGI GEKHVPVYIA GALIRDGEWL YADSDGILVS KFELSL

Best Arabidopsis Sequence Match ( AT5G56260.1 )
(BLAST)

001: MAAFATAEAC DSNAELISNG DLRALHPIFK IYGQRRCFSG PIVTLKVFED NVLVRNQLET KGEGGVLVID GGGSMRCALV GGNLGQLAQN NGWSGIVVNG
101: CVRDVDEIND CDVGVRALGS NPLKSTKKGH GEKNVPVHIG GTLIRDGEWL YADSDGILIS KTELSV

Arabidopsis Description

Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [Source:TAIR;Acc:AT5G56260]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.