Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g005670.1.1 | Tomato | plastid | 47.49 | 92.39 |
| PGSC0003DMT400029207 | Potato | cytosol | 72.63 | 78.31 |
| VIT_19s0015g01900.t01 | Wine grape | cytosol | 63.69 | 68.67 |
| CDY20739 | Canola | cytosol | 60.89 | 65.66 |
| CDY36787 | Canola | cytosol | 60.34 | 65.06 |
| CDY11948 | Canola | cytosol | 60.34 | 65.06 |
| Bra035612.1-P | Field mustard | cytosol | 60.34 | 65.06 |
| Bra028940.1-P | Field mustard | cytosol | 60.34 | 65.06 |
| CDY06513 | Canola | cytosol | 59.22 | 63.86 |
| GSMUA_Achr1P09370_001 | Banana | cytosol | 58.66 | 63.25 |
| PGSC0003DMT400075872 | Potato | cytosol | 56.42 | 60.84 |
| CDY32800 | Canola | cytosol | 23.46 | 56.0 |
| Bra002829.1-P | Field mustard | cytosol | 23.46 | 56.0 |
| CDY62102 | Canola | cytosol | 27.37 | 55.06 |
| AT5G56260.4 | Thale cress | extracellular | 60.34 | 54.55 |
| KRH21645 | Soybean | mitochondrion | 57.54 | 50.74 |
| KRH10689 | Soybean | extracellular, plasma membrane, plastid | 57.54 | 49.05 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400090515 | EnsemblPlantsGene:PGSC0003DMG400040086 | Gene3D:3.50.30.40 | InterPro:RraA/RraA-like | InterPro:RraA/RraA-like_sf | PANTHER:PTHR33254 |
| PANTHER:PTHR33254:SF3 | PFAM:PF03737 | PGSC:PGSC0003DMG400040086 | SEG:seg | SUPFAM:SSF89562 | UniParc:UPI000296E39E |
| UniProt:M1DKK0 | MapMan:35.1 | : | : | : | : |
Description
Regulator of ribonuclease activity A [Source:PGSC_GENE;Acc:PGSC0003DMG400040086]
Coordinates
chr10:-:741705..742345
Molecular Weight (calculated)
19807.2 Da
IEP (calculated)
8.043
GRAVY (calculated)
-0.026
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGICQMAIY EFCHQSSKIY GQRRAFSGPI TTLKVFDGNV LVRELLETRG EGRVLVIDGG GSMRCALLGG NLGQLAQNMG WAGIVVNGCI RDVDRRSTSF
101: KYTTWILAIC GFLPFEIRFE PEGCDIGVRA LASHPQKPNK KCQSEKHVPI YIGGMMIREG EWLYADSDGI LVSKTELSI
101: KYTTWILAIC GFLPFEIRFE PEGCDIGVRA LASHPQKPNK KCQSEKHVPI YIGGMMIREG EWLYADSDGI LVSKTELSI
001: MAAFATAEAC DSNAELISNG DLRALHPIFK IYGQRRCFSG PIVTLKVFED NVLVRNQLET KGEGGVLVID GGGSMRCALV GGNLGQLAQN NGWSGIVVNG
101: CVRDVDEIND CDVGVRALGS NPLKSTKKGH GEKNVPVHIG GTLIRDGEWL YADSDGILIS KTELSV
101: CVRDVDEIND CDVGVRALGS NPLKSTKKGH GEKNVPVHIG GTLIRDGEWL YADSDGILIS KTELSV
Arabidopsis Description
Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [Source:TAIR;Acc:AT5G56260]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.