Factsheet for Bra006355.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78691	Canola	cytosol	99.4	99.4
AT5G16450.1	Thale cress	cytosol	94.58	94.58
Bra021412.1-P	Field mustard	cytosol	94.58	94.58
Bra001062.1-P	Field mustard	cytosol	93.98	93.98
KRH00921	Soybean	cytosol	84.94	84.94
KRH40302	Soybean	cytosol, nucleus	84.34	84.34
PGSC0003DMT400075872	Potato	cytosol	83.13	83.13
TraesCS7A01G558300.1	Wheat	cytosol, extracellular	81.33	80.36
GSMUA_Achr3P14020_001	Banana	cytosol	80.72	79.76
GSMUA_Achr4P05260_001	Banana	cytosol	69.88	79.45
TraesCS7D01G551700.1	Wheat	cytosol	80.12	79.17
GSMUA_Achr4P11830_001	Banana	cytosol	80.12	79.17
TraesCS7B01G483200.1	Wheat	cytosol	80.12	79.17
Zm00001d014883_P001	Maize	cytosol, extracellular, mitochondrion	79.52	78.57
Os02t0761900-01	Rice	cytosol, extracellular, plasma membrane, plastid	77.11	76.19
EES02468	Sorghum	cytosol	71.69	70.83
TraesCS7D01G551600.1	Wheat	cytosol, unclear	71.69	70.83
Os02t0762100-01	Rice	cytosol, plasma membrane	71.69	70.83
TraesCS7A01G558200.1	Wheat	cytosol, plastid	71.08	70.24
Zm00001d039841_P001	Maize	extracellular	71.08	70.24
VIT_04s0023g00590.t01	Wine grape	cytosol	83.13	69.7
TraesCS7B01G483100.1	Wheat	cytosol	69.28	68.45
Bra028940.1-P	Field mustard	cytosol	67.47	67.47
Bra035612.1-P	Field mustard	cytosol	67.47	67.47
HORVU1Hr1G058220.1	Barley	cytosol	21.08	67.31
TraesCS7D01G552200.1	Wheat	cytosol	67.47	66.67
HORVU1Hr1G045180.2	Barley	cytosol	24.7	64.06
HORVU5Hr1G024120.1	Barley	cytosol	34.94	63.04
HORVU1Hr1G010560.1	Barley	cytosol	22.89	59.38
HORVU1Hr1G040320.1	Barley	cytosol	31.33	59.09
Bra002829.1-P	Field mustard	cytosol	25.9	57.33
HORVU3Hr1G024340.2	Barley	cytosol	34.34	55.34
Solyc04g008280.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, unclear	83.13	54.98
HORVU3Hr1G110300.1	Barley	cytosol	34.34	50.44
KXG31862	Sorghum	cytosol	53.01	49.44
HORVU7Hr1G120490.20	Barley	plastid	79.52	48.71
HORVU3Hr1G042110.1	Barley	mitochondrion	27.71	45.1
HORVU5Hr1G074130.1	Barley	cytosol	37.35	41.61

Protein Annotations

Gene3D:3.50.30.40	MapMan:35.1	EnsemblPlantsGene:Bra006355	EnsemblPlants:Bra006355.1	EnsemblPlants:Bra006355.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008428
GO:GO:0008948	GO:GO:0009987	GO:GO:0016829	GO:GO:0030234	GO:GO:0043086	GO:GO:0046872
GO:GO:0047443	GO:GO:0051252	UniProt:M4CQ66	PFAM:PF03737	PANTHER:PTHR33254	PANTHER:PTHR33254:SF13
InterPro:RraA	InterPro:RraA/RraA-like	InterPro:RraA/RraA-like_sf	SUPFAM:SSF89562	TIGRFAMs:TIGR01935	UniParc:UPI000253F5FE

Description

AT5G16450 (E=1e-089) | dimethylmenaquinone methyltransferase family protein

Coordinates

chrA03:+:3151226..3151794

Molecular Weight (calculated)

17768.4 Da

IEP (calculated)

5.245

GRAVY (calculated)

0.019

Length

166 amino acids

Sequence
(BLAST)

001: MAFVTTAEVC DANQDLIRSG ELKALQPIFQ IYGRRQIFSG PVVTVKVFED NGLIRQFLEE KGNGRVLVVD GGGSQRCAIL GGNPVVQAQN NGWAGIIVNG
101: CIRDVDEIKG CDIGVRALAS HPIKASKKGL GEQRVPVNIA GTRICDGEWV YADTDGVLVS QTELSV

Best Arabidopsis Sequence Match ( AT5G16450.2 )
(BLAST)

001: MAFVTTAEVC DANQELIRSG QLRALQPIFQ IYGRRQIFSG PVVTVKVFED NGLIRQFIEE KGNGRVLVVD GGGSQRCAIL GGNPVVQAQN NGWAGIVVNG
101: CIRDVDEING CDIGVRALAS HPIKASKKGL GEQRVPVNIA GTRICDGEWL YADTDGILVS QIELSV

Arabidopsis Description

Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.