Factsheet for Zm00001d039841_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02468	Sorghum	cytosol	94.64	94.64
Zm00001d014883_P001	Maize	cytosol, extracellular, mitochondrion	82.74	82.74
GSMUA_Achr3P14020_001	Banana	cytosol	82.74	82.74
Os02t0762100-01	Rice	cytosol, plasma membrane	80.95	80.95
TraesCS7B01G483100.1	Wheat	cytosol	78.57	78.57
GSMUA_Achr4P11830_001	Banana	cytosol	78.57	78.57
GSMUA_Achr4P05260_001	Banana	cytosol	67.86	78.08
TraesCS7A01G558200.1	Wheat	cytosol, plastid	77.98	77.98
TraesCS7D01G551600.1	Wheat	cytosol, unclear	77.38	77.38
PGSC0003DMT400075872	Potato	cytosol	76.19	77.11
KRH40302	Soybean	cytosol, nucleus	75.0	75.9
TraesCS7D01G552200.1	Wheat	cytosol	75.6	75.6
KRH00921	Soybean	cytosol	73.81	74.7
AT5G16450.1	Thale cress	cytosol	72.62	73.49
Bra021412.1-P	Field mustard	cytosol	71.43	72.29
CDX74237	Canola	cytosol	71.43	72.29
CDY69168	Canola	cytosol	71.43	72.29
CDY53745	Canola	cytosol	71.43	72.29
Bra001062.1-P	Field mustard	cytosol	71.43	72.29
CDX70694	Canola	cytosol	70.83	71.69
CDX92011	Canola	cytosol	70.83	71.69
CDX78691	Canola	cytosol	70.83	71.69
AT3G02770.1	Thale cress	cytosol	70.24	71.08
Bra006355.1-P	Field mustard	cytosol	70.24	71.08
VIT_04s0023g00590.t01	Wine grape	cytosol	76.19	64.65
KXG31862	Sorghum	cytosol	68.45	64.61
Solyc04g008280.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, unclear	76.19	51.0
CDX96297	Canola	cytosol	23.21	47.56

Protein Annotations

Gene3D:3.50.30.40	MapMan:35.1	UniProt:B6SMX7	EMBL:BT065598	EMBL:EU954092	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008428
GO:GO:0008948	GO:GO:0009987	GO:GO:0016829	GO:GO:0030234	GO:GO:0043086	GO:GO:0046872
GO:GO:0047443	GO:GO:0051252	ProteinID:ONM29995.1	PFAM:PF03737	PANTHER:PTHR33254	PANTHER:PTHR33254:SF15
InterPro:RraA	InterPro:RraA/RraA-like	InterPro:RraA/RraA-like_sf	SUPFAM:SSF89562	TIGRFAMs:TIGR01935	UniParc:UPI000182AE5C
EnsemblPlantsGene:Zm00001d039841	EnsemblPlants:Zm00001d039841_P001	EnsemblPlants:Zm00001d039841_T001	:	:	:

Description

Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2

Coordinates

chr3:-:16413698..16414265

Molecular Weight (calculated)

17953.8 Da

IEP (calculated)

5.679

GRAVY (calculated)

0.137

Length

168 amino acids

Sequence
(BLAST)

001: MAALPLATAE ACDANAALIM NGDLRSLQPI FRIYGGRQIF AGPVVTLKIF EDNVLLREFL EEKGHGRVLV VDAGGSMRCA VLGGNLAQLM QNNGWAGIVV
101: NGCIRDVDEI NGCDVGVRAL NSHPMKSNKK GVGEKHVPVT FAGTRICDGE WLYADSDGIL ISRSELSV

Best Arabidopsis Sequence Match ( AT5G16450.2 )
(BLAST)

001: MAFVTTAEVC DANQELIRSG QLRALQPIFQ IYGRRQIFSG PVVTVKVFED NGLIRQFIEE KGNGRVLVVD GGGSQRCAIL GGNPVVQAQN NGWAGIVVNG
101: CIRDVDEING CDIGVRALAS HPIKASKKGL GEQRVPVNIA GTRICDGEWL YADTDGILVS QIELSV

Arabidopsis Description

Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.