Factsheet for TraesCS7D01G551600.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G558200.1	Wheat	cytosol, plastid	95.83	95.83
TraesCS7D01G552200.1	Wheat	cytosol	92.26	92.26
TraesCS7D01G551700.1	Wheat	cytosol	82.14	82.14
Zm00001d039841_P001	Maize	extracellular	77.38	77.38
Os02t0762100-01	Rice	cytosol, plasma membrane	77.38	77.38
GSMUA_Achr3P14020_001	Banana	cytosol	76.79	76.79
GSMUA_Achr4P11830_001	Banana	cytosol	75.6	75.6
EES02468	Sorghum	cytosol	75.6	75.6
PGSC0003DMT400075872	Potato	cytosol	73.21	74.1
KRH40302	Soybean	cytosol, nucleus	73.21	74.1
CDX70694	Canola	cytosol	72.62	73.49
KRH00921	Soybean	cytosol	72.02	72.89
GSMUA_Achr4P05260_001	Banana	cytosol	63.1	72.6
CDX78691	Canola	cytosol	71.43	72.29
AT3G02770.1	Thale cress	cytosol	71.43	72.29
CDY69168	Canola	cytosol	70.83	71.69
CDY53745	Canola	cytosol	70.83	71.69
CDX74237	Canola	cytosol	70.83	71.69
Bra021412.1-P	Field mustard	cytosol	70.83	71.69
Bra006355.1-P	Field mustard	cytosol	70.83	71.69
Bra001062.1-P	Field mustard	cytosol	70.83	71.69
AT5G16450.1	Thale cress	cytosol	70.83	71.69
CDX92011	Canola	cytosol	70.24	71.08
VIT_04s0023g00590.t01	Wine grape	cytosol	72.02	61.11
KXG31862	Sorghum	cytosol	55.36	52.25
Solyc04g008280.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, unclear	73.21	49.0
CDX96297	Canola	cytosol	23.81	48.78

Protein Annotations

EnsemblPlants:TraesCS7D01G551600.1	EnsemblPlantsGene:TraesCS7D01G551600	Gene3D:3.50.30.40	GO:GO:0003674	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008428	GO:GO:0009987	GO:GO:0030234	GO:GO:0051252	InterPro:RraA
InterPro:RraA/RraA-like	InterPro:RraA/RraA-like_sf	PANTHER:PTHR33254	PANTHER:PTHR33254:SF15	PFAM:PF03737	SEG:seg
SUPFAM:SSF89562	TIGR:cd16841	TIGRFAMs:TIGR01935	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr7D:-:634896304..634896810

Molecular Weight (calculated)

17707.5 Da

IEP (calculated)

6.766

GRAVY (calculated)

0.157

Length

168 amino acids

Sequence
(BLAST)

001: MAALPLATAE ACDANSHMIT SGELRALQPV FRVYGGRRLF AGPVVTVKVF EDNVLVRGIL EEKGQGRVLV VDGGGSLRRA LLGGNIAMLA QNNGWAGIVI
101: NGCVRDVDEI NGCDIGVRAL GSHPIKSDKR GMGEKHVPVT VAGARICDGE WLYADADGVL VSRTELSV

Best Arabidopsis Sequence Match ( AT5G16450.2 )
(BLAST)

001: MAFVTTAEVC DANQELIRSG QLRALQPIFQ IYGRRQIFSG PVVTVKVFED NGLIRQFIEE KGNGRVLVVD GGGSQRCAIL GGNPVVQAQN NGWAGIVVNG
101: CIRDVDEING CDIGVRALAS HPIKASKKGL GEQRVPVNIA GTRICDGEWL YADTDGILVS QIELSV

Arabidopsis Description

Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.