CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40302	Soybean	cytosol, nucleus	97.59	97.59
PGSC0003DMT400075872	Potato	cytosol	90.96	90.96
GSMUA_Achr4P05260_001	Banana	cytosol	77.71	88.36
GSMUA_Achr3P14020_001	Banana	cytosol	88.55	87.5
TraesCS7B01G483200.1	Wheat	cytosol	87.95	86.9
TraesCS7D01G551700.1	Wheat	cytosol	87.95	86.9
GSMUA_Achr4P11830_001	Banana	cytosol	87.95	86.9
CDX70694	Canola	cytosol	86.75	86.75
Bra001062.1-P	Field mustard	cytosol	86.75	86.75
CDY69168	Canola	cytosol	86.75	86.75
CDY53745	Canola	cytosol	86.75	86.75
Bra021412.1-P	Field mustard	cytosol	86.75	86.75
AT3G02770.1	Thale cress	cytosol	86.14	86.14
CDX74237	Canola	cytosol	86.14	86.14
TraesCS7A01G558300.1	Wheat	cytosol, extracellular	86.75	85.71
CDX92011	Canola	cytosol	85.54	85.54
CDX78691	Canola	cytosol	85.54	85.54
Zm00001d014883_P001	Maize	cytosol, extracellular, mitochondrion	86.14	85.12
Bra006355.1-P	Field mustard	cytosol	84.94	84.94
AT5G16450.1	Thale cress	cytosol	84.94	84.94
Os02t0761900-01	Rice	cytosol, extracellular, plasma membrane, plastid	85.54	84.52
VIT_04s0023g00590.t01	Wine grape	cytosol	93.37	78.28
HORVU1Hr1G058220.1	Barley	cytosol	23.49	75.0
Zm00001d039841_P001	Maize	extracellular	74.7	73.81
TraesCS7A01G558200.1	Wheat	cytosol, plastid	74.7	73.81
Os02t0762100-01	Rice	cytosol, plasma membrane	74.7	73.81
HORVU1Hr1G045180.2	Barley	cytosol	28.31	73.44
EES02468	Sorghum	cytosol	74.1	73.21
TraesCS7D01G551600.1	Wheat	cytosol, unclear	72.89	72.02
TraesCS7B01G483100.1	Wheat	cytosol	72.29	71.43
HORVU5Hr1G024120.1	Barley	cytosol	38.55	69.57
TraesCS7D01G552200.1	Wheat	cytosol	69.88	69.05
HORVU1Hr1G010560.1	Barley	cytosol	25.9	67.19
HORVU1Hr1G040320.1	Barley	cytosol	33.73	63.64
HORVU3Hr1G024340.2	Barley	cytosol	37.35	60.19
Solyc04g008280.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, unclear	90.96	60.16
HORVU3Hr1G110300.1	Barley	cytosol	37.95	55.75
KRH21645	Soybean	mitochondrion	66.27	54.19
HORVU7Hr1G120490.20	Barley	plastid	87.35	53.51
KXG31862	Sorghum	cytosol	56.63	52.81
CDX96297	Canola	cytosol	25.9	52.44
KRH10689	Soybean	extracellular, plasma membrane, plastid	66.27	52.38
HORVU3Hr1G042110.1	Barley	mitochondrion	31.33	50.98
HORVU5Hr1G074130.1	Barley	cytosol	41.57	46.31

Protein Annotations

EntrezGene:100500691	Gene3D:3.50.30.40	MapMan:35.1	UniProt:A0A0R0FDV1	EMBL:ACUP02011482	EnsemblPlantsGene:GLYMA_18G242200
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008428	GO:GO:0008948	GO:GO:0009987	GO:GO:0016829	GO:GO:0030234	GO:GO:0043086
GO:GO:0046872	GO:GO:0047443	GO:GO:0051252	EnsemblPlants:KRH00921	ProteinID:KRH00921	ProteinID:KRH00921.1
PFAM:PF03737	PANTHER:PTHR33254	PANTHER:PTHR33254:SF13	InterPro:RraA	InterPro:RraA/RraA-like	InterPro:RraA/RraA-like_sf
SUPFAM:SSF89562	TIGRFAMs:TIGR01935	UniParc:UPI0001890BA6	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:53057532..53059196

Molecular Weight (calculated)

17852.6 Da

IEP (calculated)

4.947

GRAVY (calculated)

0.096

Length

166 amino acids

Sequence
(BLAST)

001: MAFVTTAEVC DANPQLILSG ELRALQPVFQ IYGRRQVFSG PIVTLKVFED NVLVREFLEE KGNGRVLVVD GGASLRCAIL GGNPVVQAQN NGWAGIIVNG
101: CIRDVDEING CDIGVRALAS HPMKANKKGM GEKQVPINIA GTRISDGEWL YADTDGILIS RTELSV

Best Arabidopsis Sequence Match ( AT3G02770.1 )
(BLAST)

001: MAFVTTAEVC DANQEMIRSG QLRALQPVFQ IYGRRQIFSG PVVTVKVFED NGLIRHFLEE KGNGRVLVVD GGGSLRCAIL GGNPVVQAQN NGWAGIIVNG
101: CIRDVDEING CDIGVRALAS HPIKASKKGL GEQRVSLNIA GTRICDGEWL YADTDGILVS QIELSV

Arabidopsis Description

Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.