CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00921	Soybean	cytosol	97.59	97.59
PGSC0003DMT400075872	Potato	cytosol	90.96	90.96
TraesCS7B01G483200.1	Wheat	cytosol	89.16	88.1
TraesCS7D01G551700.1	Wheat	cytosol	89.16	88.1
GSMUA_Achr4P05260_001	Banana	cytosol	77.11	87.67
GSMUA_Achr3P14020_001	Banana	cytosol	88.55	87.5
TraesCS7A01G558300.1	Wheat	cytosol, extracellular	87.95	86.9
GSMUA_Achr4P11830_001	Banana	cytosol	87.95	86.9
CDX70694	Canola	cytosol	86.14	86.14
Zm00001d014883_P001	Maize	cytosol, extracellular, mitochondrion	86.75	85.71
Os02t0761900-01	Rice	cytosol, extracellular, plasma membrane, plastid	86.75	85.71
CDY69168	Canola	cytosol	85.54	85.54
CDY53745	Canola	cytosol	85.54	85.54
Bra021412.1-P	Field mustard	cytosol	85.54	85.54
Bra001062.1-P	Field mustard	cytosol	85.54	85.54
AT5G16450.1	Thale cress	cytosol	85.54	85.54
AT3G02770.1	Thale cress	cytosol	84.94	84.94
CDX78691	Canola	cytosol	84.94	84.94
CDX74237	Canola	cytosol	84.94	84.94
CDX92011	Canola	cytosol	84.34	84.34
Bra006355.1-P	Field mustard	cytosol	84.34	84.34
VIT_04s0023g00590.t01	Wine grape	cytosol	93.37	78.28
Zm00001d039841_P001	Maize	extracellular	75.9	75.0
TraesCS7A01G558200.1	Wheat	cytosol, plastid	75.9	75.0
HORVU1Hr1G058220.1	Barley	cytosol	23.49	75.0
EES02468	Sorghum	cytosol	75.3	74.4
Os02t0762100-01	Rice	cytosol, plasma membrane	75.3	74.4
HORVU1Hr1G045180.2	Barley	cytosol	28.31	73.44
TraesCS7D01G551600.1	Wheat	cytosol, unclear	74.1	73.21
TraesCS7B01G483100.1	Wheat	cytosol	73.49	72.62
TraesCS7D01G552200.1	Wheat	cytosol	70.48	69.64
HORVU5Hr1G024120.1	Barley	cytosol	38.55	69.57
HORVU1Hr1G010560.1	Barley	cytosol	25.9	67.19
HORVU1Hr1G040320.1	Barley	cytosol	33.73	63.64
HORVU3Hr1G024340.2	Barley	cytosol	37.35	60.19
Solyc04g008280.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, unclear	90.96	60.16
HORVU3Hr1G110300.1	Barley	cytosol	37.95	55.75
KRH21645	Soybean	mitochondrion	66.87	54.68
HORVU7Hr1G120490.20	Barley	plastid	87.35	53.51
KRH10689	Soybean	extracellular, plasma membrane, plastid	66.87	52.86
KXG31862	Sorghum	cytosol	56.63	52.81
CDX96297	Canola	cytosol	25.9	52.44
HORVU3Hr1G042110.1	Barley	mitochondrion	31.33	50.98
HORVU5Hr1G074130.1	Barley	cytosol	42.17	46.98

Protein Annotations

EntrezGene:100783612	Gene3D:3.50.30.40	MapMan:35.1	UniProt:A0A0R0ID57	EMBL:ACUP02006035	EnsemblPlantsGene:GLYMA_09G250300
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008428	GO:GO:0008948	GO:GO:0009987	GO:GO:0016829	GO:GO:0030234	GO:GO:0043086
GO:GO:0046872	GO:GO:0047443	GO:GO:0051252	EnsemblPlants:KRH40302	ProteinID:KRH40302	ProteinID:KRH40302.1
PFAM:PF03737	PANTHER:PTHR33254	PANTHER:PTHR33254:SF13	InterPro:RraA	InterPro:RraA/RraA-like	InterPro:RraA/RraA-like_sf
SUPFAM:SSF89562	TIGRFAMs:TIGR01935	UniParc:UPI0001890A7E	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:47111520..47114134

Molecular Weight (calculated)

17819.5 Da

IEP (calculated)

5.225

GRAVY (calculated)

0.094

Length

166 amino acids

Sequence
(BLAST)

001: MAFVTTAEVC DANPQLILSG ELRALQPVFQ IYGRRQVFSG PIVTLKVFED NVLVREFLEE KGNGRVLVVD GGASLRCAIL GGNPVVQAQN NGWAGIVVNG
101: CIRDVDEING CDIGVRALAS HPMKANKKGM GEKHVPVNIA GTRISDGDWL YADTDGILIS RTELSV

Best Arabidopsis Sequence Match ( AT5G16450.2 )
(BLAST)

001: MAFVTTAEVC DANQELIRSG QLRALQPIFQ IYGRRQIFSG PVVTVKVFED NGLIRQFIEE KGNGRVLVVD GGGSQRCAIL GGNPVVQAQN NGWAGIVVNG
101: CIRDVDEING CDIGVRALAS HPIKASKKGL GEQRVPVNIA GTRICDGEWL YADTDGILVS QIELSV

Arabidopsis Description

Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.