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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g078310.2.1
Solyc12g088470.1.1
Solyc12g088500.1.1
Solyc12g088520.1.1
Solyc12g088530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 Solyc04g078310.2.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088470.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088500.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088520.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088530.1.1 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g014530.2.1 Tomato cytosol, extracellular 73.27 49.33
PGSC0003DMT400021868 Potato cytosol 66.34 44.67
Solyc09g014550.2.1 Tomato cytosol 64.36 42.76
Solyc09g014580.2.1 Tomato cytosol 61.39 40.79
Solyc09g005400.2.1 Tomato cytosol 54.46 36.67
Solyc09g005420.2.1 Tomato cytosol 54.46 36.67
Solyc09g005410.1.1 Tomato cytosol 47.52 35.29
Solyc07g008710.2.1 Tomato cytosol, extracellular, nucleus 55.45 35.22
Solyc05g046160.1.1 Tomato cytosol 20.79 32.81
Solyc01g081130.2.1 Tomato cytosol 23.76 31.58
Solyc05g046220.1.1 Tomato cytosol 29.7 31.25
CDY12485 Canola cytosol 23.76 24.24
AT5G28010.2 Thale cress cytosol 37.62 22.89
AT5G28000.1 Thale cress cytosol 35.64 21.95
Bra007946.1-P Field mustard cytosol 29.7 21.9
CDY09499 Canola cytosol 29.7 21.9
VIT_01s0011g05190.t01 Wine grape cytosol 32.67 21.85
Solyc09g005500.2.1 Tomato extracellular 32.67 21.85
Bra012364.1-P Field mustard cytosol 33.66 21.38
CDY25772 Canola cytosol 33.66 21.38
VIT_01s0011g05150.t01 Wine grape cytosol 28.71 21.01
VIT_01s0011g05180.t01 Wine grape cytosol 30.69 20.53
AT1G70890.1 Thale cress cytosol 31.68 20.25
Solyc04g007830.2.1 Tomato cytosol 26.73 20.15
Bra016181.1-P Field mustard cytosol 26.73 19.57
CDX96283 Canola cytosol 26.73 19.57
Bra012362.1-P Field mustard cytosol 30.69 19.38
CDY12484 Canola cytosol 30.69 19.38
Solyc05g046140.2.1 Tomato endoplasmic reticulum, extracellular 28.71 19.33
CDY41465 Canola cytosol 29.7 19.11
Bra016364.1-P Field mustard cytosol 29.7 19.11
AT1G35260.1 Thale cress cytosol 28.71 19.08
CDX89696 Canola cytosol 27.72 18.54
CDX91696 Canola cytosol 28.71 18.47
CDY09495 Canola cytosol 28.71 18.35
Bra007947.1-P Field mustard cytosol 28.71 18.35
Bra016180.1-P Field mustard cytosol 24.75 18.12
CDX72752 Canola cytosol 24.75 18.12
KRH13947 Soybean cytosol 27.72 18.06
CDY12480 Canola cytosol 28.71 18.01
Solyc05g046150.2.1 Tomato cytosol, extracellular 26.73 18.0
AT1G35310.1 Thale cress cytosol 26.73 17.88
AT1G70880.1 Thale cress cytosol 27.72 17.61
AT1G70840.1 Thale cress cytosol 29.7 17.54
KRH37979 Soybean cytosol 26.73 17.42
CDY41463 Canola cytosol 27.72 17.39
Bra016362.1-P Field mustard cytosol 27.72 17.39
Bra012361.1-P Field mustard cytosol 23.76 17.27
CDY17433 Canola cytosol 25.74 17.22
Bra003939.1-P Field mustard cytosol 27.72 17.18
CDX68328 Canola cytosol 27.72 17.07
CDY03715 Canola cytosol 27.72 17.07
CDY65619 Canola cytosol 27.72 17.07
CDY23474 Canola cytosol 26.73 16.56
Bra024564.1-P Field mustard cytosol 29.7 16.48
CDY21418 Canola cytosol 29.7 16.48
CDY00801 Canola cytosol 28.71 16.38
Bra016179.1-P Field mustard cytosol 23.76 16.33
KRH13946 Soybean cytosol 24.75 16.13
CDY68859 Canola cytosol 22.77 15.86
CDY70076 Canola cytosol 22.77 15.86
CDY12482 Canola cytosol 18.81 15.2
AT1G23130.1 Thale cress cytosol 23.76 15.0
CDY03713 Canola cytosol 22.77 14.94
Bra016182.1-P Field mustard cytosol 29.7 14.42
Bra012363.1-P Field mustard cytosol 22.77 14.29
Bra016178.1-P Field mustard cytosol 21.78 13.92
CDX72753 Canola cytosol 21.78 13.92
CDY25771 Canola cytosol 21.78 13.84
KRH13944 Soybean cytosol 17.82 12.86
CDY03718 Canola cytosol 28.71 12.66
Bra007945.1-P Field mustard cytosol 28.71 12.66
CDY09492 Canola cytosol 28.71 12.66
Bra007949.1-P Field mustard cytosol 28.71 11.51
CDX92456 Canola cytosol 13.86 10.37
CDY16542 Canola cytosol 13.86 10.37
AT1G70850.1 Thale cress cytosol 31.68 10.13
Bra002309.1-P Field mustard cytosol 12.87 9.63
Solyc09g014560.1.1 Tomato cytosol 6.93 9.46
AT1G70830.1 Thale cress cytosol 26.73 8.06
AT1G70860.2 Thale cress cytosol 3.96 5.33
CDX96282 Canola cytosol 3.96 3.28
VIT_01s0011g05170.t01 Wine grape cytosol 1.98 3.12
CDY11541 Canola cytosol 3.96 2.58
Protein Annotations
EnsemblPlants:Solyc09g014540.1.1EnsemblPlantsGene:Solyc09g014540.1Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31907PANTHER:PTHR31907:SF4
PFAM:PF00407SMART:SM01037SUPFAM:SSF55961UniParc:UPI000276B91AUniProt:K4CRT1MapMan:35.2
Description
No Description!
Coordinates
chr9:-:6153756..6154061
Molecular Weight (calculated)
11771.1 Da
IEP (calculated)
8.483
GRAVY (calculated)
-0.716
Length
101 amino acids
Sequence
(BLAST)
001: MMKCGNNSCF CKAEGAKKIS KQIIEVVDHE KKVITFKEFE GDLVNKYDNF KGNSSYRNKR RNRFSKLTIE YERPNENVPE LVNLLDFIIG MTNAIDDHHV
101: N
Best Arabidopsis Sequence Match ( AT5G28010.1 )
(BLAST)
001: MAEKVEVTTM PKSSLLGKLE VEVEIKAPAA IFYHIYAGRP HHVAKATPRN VQSCDLHDGE WGTVGSIVYW NYVHEGQAKV AKERIELVEP EKKLIKFRVI
101: EGDVMAEYKS FLITIQVTPK EGGTGSVVKW HIEYEKIDEN VPHPENLLPF FAEMTKEIDE HLLSEE
Arabidopsis Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K5S5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.