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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • plastid 1
  • cytosol 3
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
 extracellular: 22364583
endoplasmic reticulum: 29145071
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g078310.2.1
Solyc12g088470.1.1
Solyc12g088500.1.1
Solyc12g088520.1.1
Solyc12g088530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 Solyc04g078310.2.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088470.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088500.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088520.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088530.1.1 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc04g007830.2.1 Tomato cytosol 75.33 84.33
Solyc05g046160.1.1 Tomato cytosol 34.0 79.69
Solyc05g046220.1.1 Tomato cytosol 46.0 71.88
Solyc05g046150.2.1 Tomato cytosol, extracellular 69.33 69.33
VIT_01s0011g05170.t01 Wine grape cytosol 21.33 50.0
VIT_01s0011g05190.t01 Wine grape cytosol 46.67 46.36
Solyc09g005500.2.1 Tomato extracellular 46.0 45.7
VIT_01s0011g05150.t01 Wine grape cytosol 42.0 45.65
VIT_01s0011g05180.t01 Wine grape cytosol 45.33 45.03
Solyc09g005410.1.1 Tomato cytosol 38.67 42.65
Solyc09g005400.2.1 Tomato cytosol 42.0 42.0
AT5G28010.2 Thale cress cytosol 46.0 41.57
CDY12485 Canola cytosol 27.33 41.41
Solyc09g005420.2.1 Tomato cytosol 41.33 41.33
KRH13947 Soybean cytosol 42.67 41.29
Solyc07g008710.2.1 Tomato cytosol, extracellular, nucleus 42.67 40.25
Solyc09g014580.2.1 Tomato cytosol 40.67 40.13
CDX91696 Canola cytosol 42.0 40.13
CDY41465 Canola cytosol 42.0 40.13
Bra016364.1-P Field mustard cytosol 42.0 40.13
Bra012362.1-P Field mustard cytosol 42.67 40.0
KRH37979 Soybean cytosol 40.67 39.35
Solyc09g014550.2.1 Tomato cytosol 39.33 38.82
CDY12484 Canola cytosol 41.33 38.75
CDY65619 Canola cytosol 42.0 38.41
AT1G70840.1 Thale cress cytosol 43.33 38.01
CDY09495 Canola cytosol 40.0 37.97
Bra007947.1-P Field mustard cytosol 40.0 37.97
AT5G28000.1 Thale cress cytosol 41.33 37.8
CDY03715 Canola cytosol 41.33 37.8
Solyc09g014530.2.1 Tomato cytosol, extracellular 37.33 37.33
AT1G70860.2 Thale cress cytosol 18.67 37.33
CDX68328 Canola cytosol 40.0 36.59
Bra007946.1-P Field mustard cytosol 33.33 36.5
CDY23474 Canola cytosol 39.33 36.2
KRH13946 Soybean cytosol 37.33 36.13
AT1G70890.1 Thale cress cytosol 38.0 36.08
Bra003939.1-P Field mustard cytosol 38.67 35.58
Solyc01g081130.2.1 Tomato cytosol 18.0 35.53
Bra012361.1-P Field mustard cytosol 32.67 35.25
Solyc09g014560.1.1 Tomato cytosol 17.33 35.14
CDY03713 Canola cytosol 36.0 35.06
AT1G70880.1 Thale cress cytosol 36.67 34.59
Bra016179.1-P Field mustard cytosol 33.33 34.01
CDY09499 Canola cytosol 30.67 33.58
CDY25772 Canola cytosol 35.33 33.33
Bra012364.1-P Field mustard cytosol 35.33 33.33
Bra016178.1-P Field mustard cytosol 34.67 32.91
KRH13944 Soybean cytosol 30.67 32.86
CDX72753 Canola cytosol 34.0 32.28
AT1G23130.1 Thale cress cytosol 34.0 31.88
CDY12480 Canola cytosol 33.33 31.06
CDY41463 Canola cytosol 33.33 31.06
Bra016362.1-P Field mustard cytosol 33.33 31.06
Bra016180.1-P Field mustard cytosol 28.0 30.43
Bra016182.1-P Field mustard cytosol 42.0 30.29
CDY21418 Canola cytosol 36.67 30.22
Bra024564.1-P Field mustard cytosol 36.67 30.22
CDY00801 Canola cytosol 35.33 29.94
CDX72752 Canola cytosol 27.33 29.71
AT1G35260.1 Thale cress cytosol 30.0 29.61
CDY12482 Canola cytosol 24.67 29.6
CDX96283 Canola cytosol 26.67 28.99
Bra016181.1-P Field mustard cytosol 26.67 28.99
CDY70076 Canola cytosol 28.0 28.97
Solyc09g014540.1.1 Tomato cytosol 19.33 28.71
CDX89696 Canola cytosol 28.0 27.81
CDY25771 Canola cytosol 29.33 27.67
Bra012363.1-P Field mustard cytosol 29.33 27.33
CDY68859 Canola cytosol 26.0 26.9
Bra007945.1-P Field mustard cytosol 40.67 26.64
CDY09492 Canola cytosol 40.67 26.64
CDY03718 Canola cytosol 40.67 26.64
AT1G35310.1 Thale cress cytosol 26.0 25.83
CDX96282 Canola cytosol 20.67 25.41
CDY17433 Canola cytosol 25.33 25.17
CDY16542 Canola cytosol 21.33 23.7
CDX92456 Canola cytosol 20.0 22.22
Bra002309.1-P Field mustard cytosol 20.0 22.22
CDY11541 Canola cytosol 22.67 21.94
Bra007949.1-P Field mustard cytosol 36.67 21.83
AT1G70850.1 Thale cress cytosol 42.0 19.94
AT1G70830.1 Thale cress cytosol 40.0 17.91
Protein Annotations
EnsemblPlants:Solyc05g046140.2.1EnsemblPlantsGene:Solyc05g046140.2Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31907PANTHER:PTHR31907:SF4
PFAM:PF00407SEG:segSMART:SM01037SUPFAM:SSF55961UniParc:UPI0002766AB7UniProt:K4C0U7
MapMan:35.1:::::
Description
No Description!
Coordinates
chr5:-:58320136..58321632
Molecular Weight (calculated)
17597.9 Da
IEP (calculated)
5.091
GRAVY (calculated)
-0.467
Length
150 amino acids
Sequence
(BLAST)
001: MSLHGKLVSE IEIKCDGDIF YEVYRHRPHH ISTMSPNNIQ NVDVHEGEWG TVDSVIFWNF IHDGKEVVAK EKVEEIDEEN KLIKKKIIEG DILEYYKSFY
101: ITVHVETKGE NNLVTLIIEY EKKNANVPDP HTFMELILNV TKDIENYHIK
Best Arabidopsis Sequence Match ( AT5G28010.2 )
(BLAST)
001: MAEKVEVTTM PKSSLLGKLE VEVEIKAPAA IFYHIYAGRP HHVAKATPRN VQSCDLHDGE WGTVGSIVYW NYVHEGQAKV AKERIELVEP EKKLIKFRVI
101: EGDVMAEYKS FLITIQVTPK EGGTGSVVKW HIEYEKIDEN VPHPENLLPF FAEMTKEIDE HLLSEE
Arabidopsis Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K5S5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.