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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 1
  • cytosol 3
  • mitochondrion 1
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, extracellular, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:extracellular
YLoc:cytosol
 extracellular: 22364583
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g078310.2.1
Solyc12g088470.1.1
Solyc12g088500.1.1
Solyc12g088520.1.1
Solyc12g088530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 Solyc04g078310.2.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088470.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088500.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088520.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088530.1.1 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400077743 Potato cytosol 95.36 95.36
PGSC0003DMT400056811 Potato cytosol 80.13 93.8
PGSC0003DMT400044158 Potato cytosol 60.93 63.89
VIT_01s0011g05170.t01 Wine grape cytosol 23.18 54.69
Solyc05g046160.1.1 Tomato cytosol 20.53 48.44
VIT_01s0011g05190.t01 Wine grape cytosol 47.68 47.68
Solyc09g005410.1.1 Tomato cytosol 42.38 47.06
Solyc09g014580.2.1 Tomato cytosol 47.02 46.71
Solyc05g046150.2.1 Tomato cytosol, extracellular 46.36 46.67
Solyc09g014530.2.1 Tomato cytosol, extracellular 45.7 46.0
Solyc05g046140.2.1 Tomato endoplasmic reticulum, extracellular 45.7 46.0
Solyc09g014550.2.1 Tomato cytosol 45.7 45.39
Solyc09g005420.2.1 Tomato cytosol 44.37 44.67
Solyc09g005400.2.1 Tomato cytosol 44.37 44.67
Solyc07g008710.2.1 Tomato cytosol, extracellular, nucleus 47.02 44.65
VIT_01s0011g05150.t01 Wine grape cytosol 39.74 43.48
Solyc04g007830.2.1 Tomato cytosol 38.41 43.28
VIT_01s0011g05180.t01 Wine grape cytosol 42.38 42.38
Solyc09g014560.1.1 Tomato cytosol 20.53 41.89
CDY09495 Canola cytosol 41.06 39.24
Bra007947.1-P Field mustard cytosol 41.06 39.24
AT1G70890.1 Thale cress cytosol 40.4 38.61
Solyc05g046220.1.1 Tomato cytosol 24.5 38.54
CDY65619 Canola cytosol 41.06 37.8
CDY03715 Canola cytosol 41.06 37.8
CDY41465 Canola cytosol 39.07 37.58
Bra016364.1-P Field mustard cytosol 39.07 37.58
KRH37979 Soybean cytosol 38.41 37.42
CDY12485 Canola cytosol 24.5 37.37
CDY09499 Canola cytosol 33.77 37.23
CDY03713 Canola cytosol 37.75 37.01
Bra003939.1-P Field mustard cytosol 39.74 36.81
AT5G28010.2 Thale cress cytosol 40.4 36.75
CDX68328 Canola cytosol 39.74 36.59
CDY23474 Canola cytosol 39.07 36.2
CDX91696 Canola cytosol 37.09 35.67
KRH13947 Soybean cytosol 36.42 35.48
Bra016179.1-P Field mustard cytosol 34.44 35.37
AT1G70840.1 Thale cress cytosol 39.74 35.09
Bra012362.1-P Field mustard cytosol 37.09 35.0
AT1G70860.2 Thale cress cytosol 17.22 34.67
Bra007946.1-P Field mustard cytosol 31.13 34.31
Solyc01g081130.2.1 Tomato cytosol 17.22 34.21
AT1G70880.1 Thale cress cytosol 35.76 33.96
CDY12484 Canola cytosol 35.76 33.75
Solyc09g014540.1.1 Tomato cytosol 21.85 32.67
Bra016178.1-P Field mustard cytosol 33.77 32.28
Bra016180.1-P Field mustard cytosol 29.14 31.88
CDX72753 Canola cytosol 33.11 31.65
KRH13946 Soybean cytosol 32.45 31.61
AT1G23130.1 Thale cress cytosol 33.11 31.25
CDX72752 Canola cytosol 28.48 31.16
CDX89696 Canola cytosol 30.46 30.46
AT5G28000.1 Thale cress cytosol 32.45 29.88
CDY70076 Canola cytosol 28.48 29.66
CDY17433 Canola cytosol 29.14 29.14
CDX96283 Canola cytosol 26.49 28.99
AT1G35260.1 Thale cress cytosol 29.14 28.95
Bra016182.1-P Field mustard cytosol 39.74 28.85
Bra012361.1-P Field mustard cytosol 26.49 28.78
KRH13944 Soybean cytosol 26.49 28.57
Bra024564.1-P Field mustard cytosol 34.44 28.57
CDY21418 Canola cytosol 34.44 28.57
CDY68859 Canola cytosol 27.15 28.28
Bra016181.1-P Field mustard cytosol 25.83 28.26
CDY00801 Canola cytosol 33.11 28.25
CDY12482 Canola cytosol 23.18 28.0
CDY25771 Canola cytosol 29.14 27.67
CDY16542 Canola cytosol 24.5 27.41
Bra012363.1-P Field mustard cytosol 29.14 27.33
CDY12480 Canola cytosol 29.14 27.33
AT1G35310.1 Thale cress cytosol 27.15 27.15
Bra007945.1-P Field mustard cytosol 40.4 26.64
CDY03718 Canola cytosol 40.4 26.64
CDY09492 Canola cytosol 40.4 26.64
Bra016362.1-P Field mustard cytosol 27.81 26.09
CDY41463 Canola cytosol 27.81 26.09
Bra002309.1-P Field mustard cytosol 23.18 25.93
CDX92456 Canola cytosol 22.52 25.19
CDY25772 Canola cytosol 25.83 24.53
Bra012364.1-P Field mustard cytosol 25.83 24.53
CDX96282 Canola cytosol 19.21 23.77
Bra007949.1-P Field mustard cytosol 35.76 21.43
CDY11541 Canola cytosol 21.19 20.65
AT1G70850.1 Thale cress cytosol 43.05 20.57
AT1G70830.1 Thale cress cytosol 40.4 18.21
Protein Annotations
EnsemblPlants:Solyc09g005500.2.1EnsemblPlantsGene:Solyc09g005500.2Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31907PANTHER:PTHR31907:SF4
PFAM:PF00407SEG:segSMART:SM01037SUPFAM:SSF55961UniParc:UPI000276B11CUniProt:K4CQ40
MapMan:35.1:::::
Description
No Description!
Coordinates
chr9:+:339412..340474
Molecular Weight (calculated)
17426.7 Da
IEP (calculated)
4.906
GRAVY (calculated)
-0.438
Length
151 amino acids
Sequence
(BLAST)
001: MGLKGKLISE IEIKGCKDLF HEIFCEKPHH LPNIVPQTIQ AVDLHEGDWG TVGSVVNWNY TIEGQEKVVK VVVDDINKEK RLVTFKAFEG HLIEEYKAFK
101: ATLHIENEGD NNLVIWTIEY EKQNEEIQEP FSYLQLATNL TKDVDTHHVN Q
Best Arabidopsis Sequence Match ( AT1G70830.5 )
(BLAST)
001: MADVATKHPM EDEVKKTEAS SLVGKLETDV EIKASADKFH HMFAGKPHHV SKASPGNIQG CDLHEGDWGT VGSIVFWNYV HDGEAKVAKE RIEAVEPDKN
101: LITFRVIEGD LMKEYKSFLL TIQVTPKPGG PGSIVHWHLE YEKISEEVAH PETLLQFCVE VSKEIDEHLL AEE
Arabidopsis Description
MLP28MLP-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSK9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.