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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 22364583
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g078310.2.1
Solyc12g088470.1.1
Solyc12g088500.1.1
Solyc12g088520.1.1
Solyc12g088530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 Solyc04g078310.2.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088470.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088500.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088520.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088530.1.1 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400031386 Potato cytosol 76.67 76.16
Solyc05g046160.1.1 Tomato cytosol 30.67 71.88
Solyc04g007830.2.1 Tomato cytosol 64.0 71.64
Solyc05g046140.2.1 Tomato endoplasmic reticulum, extracellular 69.33 69.33
Solyc05g046220.1.1 Tomato cytosol 40.0 62.5
Solyc09g005500.2.1 Tomato extracellular 46.67 46.36
VIT_01s0011g05170.t01 Wine grape cytosol 18.67 43.75
VIT_01s0011g05190.t01 Wine grape cytosol 42.67 42.38
Solyc09g005410.1.1 Tomato cytosol 37.33 41.18
VIT_01s0011g05150.t01 Wine grape cytosol 37.33 40.58
Solyc09g014580.2.1 Tomato cytosol 40.67 40.13
Solyc09g005420.2.1 Tomato cytosol 40.0 40.0
KRH13947 Soybean cytosol 40.67 39.35
VIT_01s0011g05180.t01 Wine grape cytosol 38.67 38.41
CDY12485 Canola cytosol 25.33 38.38
Solyc07g008710.2.1 Tomato cytosol, extracellular, nucleus 40.0 37.74
AT1G70890.1 Thale cress cytosol 39.33 37.34
Solyc09g005400.2.1 Tomato cytosol 37.33 37.33
Solyc09g014530.2.1 Tomato cytosol, extracellular 36.67 36.67
Solyc09g014550.2.1 Tomato cytosol 36.67 36.18
KRH37979 Soybean cytosol 37.33 36.13
KRH13946 Soybean cytosol 37.33 36.13
Bra007946.1-P Field mustard cytosol 32.67 35.77
AT1G70840.1 Thale cress cytosol 40.67 35.67
Bra016364.1-P Field mustard cytosol 37.33 35.67
CDY41465 Canola cytosol 37.33 35.67
CDY03715 Canola cytosol 38.67 35.37
CDY65619 Canola cytosol 38.67 35.37
Bra012362.1-P Field mustard cytosol 37.33 35.0
Bra007947.1-P Field mustard cytosol 36.67 34.81
CDX91696 Canola cytosol 36.0 34.39
AT5G28010.2 Thale cress cytosol 38.0 34.34
Solyc01g081130.2.1 Tomato cytosol 17.33 34.21
CDY09495 Canola cytosol 36.0 34.18
Bra016178.1-P Field mustard cytosol 36.0 34.18
AT5G28000.1 Thale cress cytosol 37.33 34.15
CDY12484 Canola cytosol 36.0 33.75
CDY23474 Canola cytosol 36.67 33.74
CDX68328 Canola cytosol 36.67 33.54
Bra003939.1-P Field mustard cytosol 36.0 33.13
CDX72753 Canola cytosol 34.67 32.91
CDY09499 Canola cytosol 30.0 32.85
Solyc09g014560.1.1 Tomato cytosol 16.0 32.43
AT1G70880.1 Thale cress cytosol 33.33 31.45
Bra016179.1-P Field mustard cytosol 30.67 31.29
Bra012361.1-P Field mustard cytosol 28.67 30.94
CDY03713 Canola cytosol 31.33 30.52
AT1G23130.1 Thale cress cytosol 32.0 30.0
KRH13944 Soybean cytosol 27.33 29.29
Bra016180.1-P Field mustard cytosol 26.0 28.26
AT1G70860.2 Thale cress cytosol 14.0 28.0
CDY12482 Canola cytosol 23.33 28.0
Bra016182.1-P Field mustard cytosol 38.67 27.88
CDY00801 Canola cytosol 32.67 27.68
CDX72752 Canola cytosol 25.33 27.54
CDY21418 Canola cytosol 32.67 26.92
Bra024564.1-P Field mustard cytosol 32.67 26.92
CDY70076 Canola cytosol 26.0 26.9
CDX96283 Canola cytosol 24.67 26.81
Bra016181.1-P Field mustard cytosol 24.67 26.81
Solyc09g014540.1.1 Tomato cytosol 18.0 26.73
CDY12480 Canola cytosol 28.67 26.71
CDY41463 Canola cytosol 28.67 26.71
Bra016362.1-P Field mustard cytosol 28.67 26.71
AT1G35260.1 Thale cress cytosol 26.67 26.32
CDY25772 Canola cytosol 27.33 25.79
Bra012364.1-P Field mustard cytosol 27.33 25.79
Bra007945.1-P Field mustard cytosol 39.33 25.76
CDY09492 Canola cytosol 39.33 25.76
CDY03718 Canola cytosol 39.33 25.76
CDX89696 Canola cytosol 25.33 25.17
CDY25771 Canola cytosol 26.67 25.16
Bra012363.1-P Field mustard cytosol 26.67 24.84
CDY68859 Canola cytosol 23.33 24.14
CDY17433 Canola cytosol 24.0 23.84
AT1G35310.1 Thale cress cytosol 23.33 23.18
CDY16542 Canola cytosol 19.33 21.48
Bra002309.1-P Field mustard cytosol 18.67 20.74
CDX96282 Canola cytosol 16.67 20.49
Bra007949.1-P Field mustard cytosol 34.0 20.24
CDX92456 Canola cytosol 18.0 20.0
AT1G70850.1 Thale cress cytosol 38.67 18.35
CDY11541 Canola cytosol 18.0 17.42
AT1G70830.1 Thale cress cytosol 38.67 17.31
Protein Annotations
EnsemblPlants:Solyc05g046150.2.1EnsemblPlantsGene:Solyc05g046150.2Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31907PANTHER:PTHR31907:SF4
PFAM:PF00407SEG:segSMART:SM01037SUPFAM:SSF55961UniParc:UPI0002766AB8UniProt:K4C0U8
MapMan:35.1:::::
Description
No Description!
Coordinates
chr5:-:58346771..58347729
Molecular Weight (calculated)
17699.4 Da
IEP (calculated)
5.556
GRAVY (calculated)
-0.456
Length
150 amino acids
Sequence
(BLAST)
001: MSLEGKLVSE INIKCDGDVF HETIMYKPHY MCNICPDKIQ NVDIHKGDLG TIGSVRFWKF THDGKEMVAK EVIEKIDEEK KLVKKKMIEG DMLEYYESFY
101: LTIHVETKDE NNLVTWILEY EKKNVHVPDP HTFMELCINI TKDIESYHIK
Best Arabidopsis Sequence Match ( AT1G70830.5 )
(BLAST)
001: MADVATKHPM EDEVKKTEAS SLVGKLETDV EIKASADKFH HMFAGKPHHV SKASPGNIQG CDLHEGDWGT VGSIVFWNYV HDGEAKVAKE RIEAVEPDKN
101: LITFRVIEGD LMKEYKSFLL TIQVTPKPGG PGSIVHWHLE YEKISEEVAH PETLLQFCVE VSKEIDEHLL AEE
Arabidopsis Description
MLP28MLP-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSK9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.