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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 29876421
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g078310.2.1
Solyc12g088470.1.1
Solyc12g088500.1.1
Solyc12g088520.1.1
Solyc12g088530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 Solyc04g078310.2.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088470.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088500.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088520.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088530.1.1 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400021868 Potato cytosol 88.67 88.67
Solyc09g014550.2.1 Tomato cytosol 88.67 87.5
Solyc09g014580.2.1 Tomato cytosol 84.67 83.55
Solyc09g005410.1.1 Tomato cytosol 74.0 81.62
Solyc09g005400.2.1 Tomato cytosol 78.67 78.67
Solyc09g005420.2.1 Tomato cytosol 78.67 78.67
Solyc09g014560.1.1 Tomato cytosol 37.33 75.68
Solyc01g081130.2.1 Tomato cytosol 37.33 73.68
Solyc09g014540.1.1 Tomato cytosol 49.33 73.27
Solyc07g008710.2.1 Tomato cytosol, extracellular, nucleus 69.33 65.41
Solyc09g005500.2.1 Tomato extracellular 46.0 45.7
Solyc05g046160.1.1 Tomato cytosol 19.33 45.31
VIT_01s0011g05170.t01 Wine grape cytosol 18.0 42.19
VIT_01s0011g05190.t01 Wine grape cytosol 40.0 39.74
Solyc05g046220.1.1 Tomato cytosol 25.33 39.58
Solyc04g007830.2.1 Tomato cytosol 34.67 38.81
AT1G70890.1 Thale cress cytosol 40.0 37.97
Solyc05g046140.2.1 Tomato endoplasmic reticulum, extracellular 37.33 37.33
VIT_01s0011g05180.t01 Wine grape cytosol 37.33 37.09
Solyc05g046150.2.1 Tomato cytosol, extracellular 36.67 36.67
VIT_01s0011g05150.t01 Wine grape cytosol 33.33 36.23
AT5G28010.2 Thale cress cytosol 39.33 35.54
CDY09495 Canola cytosol 36.67 34.81
AT1G70860.2 Thale cress cytosol 17.33 34.67
AT1G70840.1 Thale cress cytosol 38.67 33.92
CDY09499 Canola cytosol 30.67 33.58
Bra007946.1-P Field mustard cytosol 30.67 33.58
Bra007947.1-P Field mustard cytosol 35.33 33.54
CDY65619 Canola cytosol 36.67 33.54
CDY03715 Canola cytosol 36.67 33.54
CDY25772 Canola cytosol 35.33 33.33
Bra012364.1-P Field mustard cytosol 35.33 33.33
Bra016364.1-P Field mustard cytosol 34.67 33.12
CDY41465 Canola cytosol 34.67 33.12
AT1G70880.1 Thale cress cytosol 34.67 32.7
Bra003939.1-P Field mustard cytosol 35.33 32.52
CDX91696 Canola cytosol 34.0 32.48
CDY12485 Canola cytosol 21.33 32.32
CDX68328 Canola cytosol 35.33 32.32
KRH13947 Soybean cytosol 32.67 31.61
CDY23474 Canola cytosol 34.0 31.29
Bra012362.1-P Field mustard cytosol 33.33 31.25
CDY12484 Canola cytosol 33.33 31.25
CDY03713 Canola cytosol 32.0 31.17
AT1G35310.1 Thale cress cytosol 31.33 31.13
CDX89696 Canola cytosol 31.33 31.13
CDY12480 Canola cytosol 33.33 31.06
AT1G35260.1 Thale cress cytosol 31.33 30.92
AT5G28000.1 Thale cress cytosol 33.33 30.49
CDY17433 Canola cytosol 30.67 30.46
Bra016180.1-P Field mustard cytosol 28.0 30.43
Bra016362.1-P Field mustard cytosol 32.67 30.43
CDY41463 Canola cytosol 32.67 30.43
Bra016179.1-P Field mustard cytosol 29.33 29.93
Bra016181.1-P Field mustard cytosol 27.33 29.71
CDX72752 Canola cytosol 27.33 29.71
CDX96283 Canola cytosol 27.33 29.71
CDY21418 Canola cytosol 36.0 29.67
Bra024564.1-P Field mustard cytosol 36.0 29.67
Bra012361.1-P Field mustard cytosol 27.33 29.5
CDY00801 Canola cytosol 34.67 29.38
AT1G23130.1 Thale cress cytosol 31.33 29.38
KRH37979 Soybean cytosol 30.0 29.03
Bra016182.1-P Field mustard cytosol 40.0 28.85
CDY16542 Canola cytosol 25.33 28.15
CDX92456 Canola cytosol 25.33 28.15
Bra002309.1-P Field mustard cytosol 25.33 28.15
Bra016178.1-P Field mustard cytosol 29.33 27.85
KRH13946 Soybean cytosol 28.67 27.74
CDX72753 Canola cytosol 28.67 27.22
CDY12482 Canola cytosol 22.0 26.4
CDY09492 Canola cytosol 38.67 25.33
CDY03718 Canola cytosol 38.67 25.33
Bra007945.1-P Field mustard cytosol 38.67 25.33
CDY25771 Canola cytosol 26.0 24.53
KRH13944 Soybean cytosol 22.67 24.29
Bra012363.1-P Field mustard cytosol 26.0 24.22
CDY70076 Canola cytosol 23.33 24.14
CDX96282 Canola cytosol 18.67 22.95
CDY68859 Canola cytosol 22.0 22.76
Bra007949.1-P Field mustard cytosol 33.33 19.84
AT1G70850.1 Thale cress cytosol 38.67 18.35
CDY11541 Canola cytosol 18.67 18.06
AT1G70830.1 Thale cress cytosol 36.67 16.42
Protein Annotations
EnsemblPlants:Solyc09g014530.2.1EnsemblPlantsGene:Solyc09g014530.2Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31907PANTHER:PTHR31907:SF4
PFAM:PF00407SMART:SM01037SUPFAM:SSF55961UniParc:UPI000276B919UniProt:K4CRT0MapMan:35.1
Description
No Description!
Coordinates
chr9:-:6149317..6151058
Molecular Weight (calculated)
17101.6 Da
IEP (calculated)
5.818
GRAVY (calculated)
-0.223
Length
150 amino acids
Sequence
(BLAST)
001: MGLKSVLCAK IEMKANKDVF HDAFTNKPHH VSTMCPLHVQ GCELLEGAFG IVGTKICWTY TLEGAKKISK QIIETVDHEK KVITFKEFEG DLVNKYDNFK
101: ATLHIETKDE IDLVSWTIEY ERPNENVPEL VNLLDFIIGM TKAIDDHHVN
Best Arabidopsis Sequence Match ( AT5G28010.2 )
(BLAST)
001: MAEKVEVTTM PKSSLLGKLE VEVEIKAPAA IFYHIYAGRP HHVAKATPRN VQSCDLHDGE WGTVGSIVYW NYVHEGQAKV AKERIELVEP EKKLIKFRVI
101: EGDVMAEYKS FLITIQVTPK EGGTGSVVKW HIEYEKIDEN VPHPENLLPF FAEMTKEIDE HLLSEE
Arabidopsis Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K5S5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.