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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, secretory
BaCelLo:secretory
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g078310.2.1
Solyc12g088470.1.1
Solyc12g088500.1.1
Solyc12g088520.1.1
Solyc12g088530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 Solyc04g078310.2.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088470.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088500.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088520.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088530.1.1 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400004549 Potato cytosol 89.47 44.74
Solyc09g014560.1.1 Tomato cytosol 42.11 43.24
Solyc09g005400.2.1 Tomato cytosol 76.32 38.67
Solyc09g014530.2.1 Tomato cytosol, extracellular 73.68 37.33
Solyc09g014580.2.1 Tomato cytosol 72.37 36.18
Solyc09g014550.2.1 Tomato cytosol 72.37 36.18
Solyc09g005420.2.1 Tomato cytosol 68.42 34.67
Solyc09g005410.1.1 Tomato cytosol 61.84 34.56
Solyc07g008710.2.1 Tomato cytosol, extracellular, nucleus 60.53 28.93
VIT_01s0011g05170.t01 Wine grape cytosol 21.05 25.0
AT1G70860.2 Thale cress cytosol 23.68 24.0
Solyc09g014540.1.1 Tomato cytosol 31.58 23.76
KRH13944 Soybean cytosol 40.79 22.14
KRH37979 Soybean cytosol 42.11 20.65
VIT_01s0011g05150.t01 Wine grape cytosol 35.53 19.57
Bra012361.1-P Field mustard cytosol 35.53 19.42
AT1G70890.1 Thale cress cytosol 39.47 18.99
KRH13946 Soybean cytosol 38.16 18.71
VIT_01s0011g05190.t01 Wine grape cytosol 36.84 18.54
Bra012364.1-P Field mustard cytosol 38.16 18.24
CDY25772 Canola cytosol 38.16 18.24
CDY12485 Canola cytosol 23.68 18.18
Solyc05g046140.2.1 Tomato endoplasmic reticulum, extracellular 35.53 18.0
AT1G35260.1 Thale cress cytosol 35.53 17.76
Bra007947.1-P Field mustard cytosol 36.84 17.72
Solyc05g046150.2.1 Tomato cytosol, extracellular 34.21 17.33
Solyc09g005500.2.1 Tomato extracellular 34.21 17.22
VIT_01s0011g05180.t01 Wine grape cytosol 34.21 17.22
CDY41465 Canola cytosol 35.53 17.2
Bra016364.1-P Field mustard cytosol 35.53 17.2
AT1G70880.1 Thale cress cytosol 35.53 16.98
CDY03713 Canola cytosol 34.21 16.88
AT1G23130.1 Thale cress cytosol 35.53 16.88
AT5G28010.2 Thale cress cytosol 36.84 16.87
KRH13947 Soybean cytosol 34.21 16.77
CDX91696 Canola cytosol 34.21 16.56
CDY17433 Canola cytosol 32.89 16.56
AT1G35310.1 Thale cress cytosol 32.89 16.56
CDX89696 Canola cytosol 32.89 16.56
Bra024564.1-P Field mustard cytosol 39.47 16.48
CDY21418 Canola cytosol 39.47 16.48
CDY09495 Canola cytosol 34.21 16.46
Solyc04g007830.2.1 Tomato cytosol 28.95 16.42
CDX96282 Canola cytosol 26.32 16.39
AT1G70840.1 Thale cress cytosol 36.84 16.37
CDY16542 Canola cytosol 28.95 16.3
Bra012362.1-P Field mustard cytosol 34.21 16.25
CDY12484 Canola cytosol 34.21 16.25
CDY12482 Canola cytosol 26.32 16.0
AT5G28000.1 Thale cress cytosol 34.21 15.85
CDX92456 Canola cytosol 27.63 15.56
CDY12480 Canola cytosol 32.89 15.53
CDY65619 Canola cytosol 32.89 15.24
CDY03715 Canola cytosol 32.89 15.24
CDY41463 Canola cytosol 31.58 14.91
Bra016362.1-P Field mustard cytosol 31.58 14.91
Bra002309.1-P Field mustard cytosol 26.32 14.81
Bra003939.1-P Field mustard cytosol 31.58 14.72
CDY23474 Canola cytosol 31.58 14.72
CDY25771 Canola cytosol 30.26 14.47
Bra012363.1-P Field mustard cytosol 30.26 14.29
CDX68328 Canola cytosol 30.26 14.02
Bra016182.1-P Field mustard cytosol 38.16 13.94
Bra016178.1-P Field mustard cytosol 28.95 13.92
CDY09499 Canola cytosol 25.0 13.87
CDX72752 Canola cytosol 25.0 13.77
Bra016180.1-P Field mustard cytosol 25.0 13.77
CDX72753 Canola cytosol 27.63 13.29
CDY03718 Canola cytosol 38.16 12.66
CDY09492 Canola cytosol 38.16 12.66
Bra007945.1-P Field mustard cytosol 38.16 12.66
Bra007946.1-P Field mustard cytosol 22.37 12.41
Bra016181.1-P Field mustard cytosol 22.37 12.32
CDX96283 Canola cytosol 22.37 12.32
CDY11541 Canola cytosol 25.0 12.26
CDY00801 Canola cytosol 27.63 11.86
Solyc05g046220.1.1 Tomato cytosol 14.47 11.46
Bra016179.1-P Field mustard cytosol 21.05 10.88
AT1G70850.1 Thale cress cytosol 35.53 8.54
Bra007949.1-P Field mustard cytosol 27.63 8.33
AT1G70830.1 Thale cress cytosol 31.58 7.16
CDY70076 Canola cytosol 13.16 6.9
CDY68859 Canola cytosol 11.84 6.21
Solyc05g046160.1.1 Tomato cytosol 3.95 4.69
Protein Annotations
EnsemblPlants:Solyc01g081130.2.1EnsemblPlantsGene:Solyc01g081130.2Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31907PANTHER:PTHR31907:SF4
PFAM:PF00407SUPFAM:SSF55961UniParc:UPI0002762974UniProt:K4AY05MapMan:35.2:
Description
No Description!
Coordinates
chr1:+:80454898..80456153
Molecular Weight (calculated)
8763.8 Da
IEP (calculated)
7.343
GRAVY (calculated)
-0.051
Length
76 amino acids
Sequence
(BLAST)
1: MCFYDVFTNK PQLVSTMCPL HVQGFEHLDG VIGKVGSKIC WMYTFEGKKK ISKQIIETID YEKKVLTLKE FEGDVV
Best Arabidopsis Sequence Match ( AT1G70880.1 )
(BLAST)
001: MAEEASSLVG IVETTVELKS SVEKFHDLLV GRPHHMSNAT PSNIQSAELQ EGEMGQVGAV ILWNYVHDGE AKSAKQRIES LDPEKNRITY RVVEGDLLKE
101: YTSFVTTFQV TPKEGEPGSV AHWHFEYEKI NEEVAHPETL LQLATEVSKD MDEHLLSEE
Arabidopsis Description
Major latex-like protein [Source:UniProtKB/TrEMBL;Acc:Q941R7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.