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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, nucleus
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 22364583
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g078310.2.1
Solyc12g088470.1.1
Solyc12g088500.1.1
Solyc12g088520.1.1
Solyc12g088530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 Solyc04g078310.2.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088470.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088500.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088520.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088530.1.1 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400031542 Potato cytosol 88.05 91.5
PGSC0003DMT400073915 Potato cytosol 86.16 89.54
PGSC0003DMT400022721 Potato cytosol 85.53 88.89
PGSC0003DMT400073916 Potato cytosol 66.04 87.5
Solyc09g014580.2.1 Tomato cytosol 67.3 70.39
Solyc09g014530.2.1 Tomato cytosol, extracellular 65.41 69.33
Solyc09g014550.2.1 Tomato cytosol 61.64 64.47
Solyc09g005410.1.1 Tomato cytosol 54.72 63.97
Solyc09g005420.2.1 Tomato cytosol 59.12 62.67
Solyc09g014560.1.1 Tomato cytosol 28.93 62.16
Solyc09g005400.2.1 Tomato cytosol 57.86 61.33
Solyc01g081130.2.1 Tomato cytosol 28.93 60.53
Solyc09g014540.1.1 Tomato cytosol 35.22 55.45
Solyc09g005500.2.1 Tomato extracellular 44.65 47.02
VIT_01s0011g05170.t01 Wine grape cytosol 18.24 45.31
Solyc04g007830.2.1 Tomato cytosol 37.11 44.03
Solyc05g046140.2.1 Tomato endoplasmic reticulum, extracellular 40.25 42.67
VIT_01s0011g05190.t01 Wine grape cytosol 39.62 41.72
Solyc05g046150.2.1 Tomato cytosol, extracellular 37.74 40.0
AT1G70890.1 Thale cress cytosol 38.99 39.24
VIT_01s0011g05150.t01 Wine grape cytosol 32.7 37.68
Solyc05g046160.1.1 Tomato cytosol 15.09 37.5
AT5G28010.2 Thale cress cytosol 38.99 37.35
Bra007947.1-P Field mustard cytosol 35.85 36.08
AT1G70860.2 Thale cress cytosol 16.98 36.0
VIT_01s0011g05180.t01 Wine grape cytosol 33.96 35.76
Bra016364.1-P Field mustard cytosol 35.22 35.67
CDY41465 Canola cytosol 35.22 35.67
CDX91696 Canola cytosol 35.22 35.67
AT1G35260.1 Thale cress cytosol 33.96 35.53
CDY09495 Canola cytosol 35.22 35.44
CDY65619 Canola cytosol 36.48 35.37
CDY03715 Canola cytosol 36.48 35.37
AT1G35310.1 Thale cress cytosol 33.33 35.1
AT1G70840.1 Thale cress cytosol 37.74 35.09
Solyc05g046220.1.1 Tomato cytosol 20.75 34.38
Bra003939.1-P Field mustard cytosol 35.22 34.36
Bra007946.1-P Field mustard cytosol 29.56 34.31
CDY09499 Canola cytosol 29.56 34.31
CDX68328 Canola cytosol 35.22 34.15
Bra016180.1-P Field mustard cytosol 29.56 34.06
AT1G70880.1 Thale cress cytosol 33.96 33.96
CDX89696 Canola cytosol 32.08 33.77
Bra012362.1-P Field mustard cytosol 33.96 33.75
CDY23474 Canola cytosol 34.59 33.74
CDY12480 Canola cytosol 33.96 33.54
CDX96283 Canola cytosol 28.93 33.33
CDY12485 Canola cytosol 20.75 33.33
Bra016181.1-P Field mustard cytosol 28.93 33.33
CDX72752 Canola cytosol 28.93 33.33
CDY12484 Canola cytosol 33.33 33.12
CDY17433 Canola cytosol 31.45 33.11
Bra012361.1-P Field mustard cytosol 28.93 33.09
CDY41463 Canola cytosol 32.7 32.3
Bra016362.1-P Field mustard cytosol 32.7 32.3
KRH13947 Soybean cytosol 31.45 32.26
Bra002309.1-P Field mustard cytosol 27.04 31.85
CDY03713 Canola cytosol 30.82 31.82
AT5G28000.1 Thale cress cytosol 32.7 31.71
Bra012364.1-P Field mustard cytosol 31.45 31.45
CDY25772 Canola cytosol 31.45 31.45
CDY16542 Canola cytosol 26.42 31.11
CDX92456 Canola cytosol 26.42 31.11
KRH37979 Soybean cytosol 30.19 30.97
Bra016179.1-P Field mustard cytosol 28.3 30.61
AT1G23130.1 Thale cress cytosol 30.19 30.0
Bra016178.1-P Field mustard cytosol 29.56 29.75
KRH13946 Soybean cytosol 28.93 29.68
CDY21418 Canola cytosol 33.33 29.12
Bra024564.1-P Field mustard cytosol 33.33 29.12
CDX72753 Canola cytosol 28.93 29.11
CDY12482 Canola cytosol 22.01 28.0
Bra016182.1-P Field mustard cytosol 36.48 27.88
CDY00801 Canola cytosol 30.82 27.68
CDY09492 Canola cytosol 38.36 26.64
Bra007945.1-P Field mustard cytosol 37.74 26.2
CDY03718 Canola cytosol 37.74 26.2
CDY70076 Canola cytosol 22.64 24.83
CDY25771 Canola cytosol 24.53 24.53
Bra012363.1-P Field mustard cytosol 24.53 24.22
CDY68859 Canola cytosol 22.01 24.14
CDX96282 Canola cytosol 18.24 23.77
KRH13944 Soybean cytosol 20.13 22.86
CDY11541 Canola cytosol 20.13 20.65
Bra007949.1-P Field mustard cytosol 32.7 20.63
AT1G70850.1 Thale cress cytosol 38.99 19.62
AT1G70830.1 Thale cress cytosol 37.11 17.61
Protein Annotations
EnsemblPlants:Solyc07g008710.2.1EnsemblPlantsGene:Solyc07g008710.2Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31907PANTHER:PTHR31907:SF4
PFAM:PF00407SEG:segSMART:SM01037SUPFAM:SSF55961UniParc:UPI000276B5FBUniProt:K4CBZ0
MapMan:35.1:::::
Description
No Description!
Coordinates
chr7:+:3683904..3685158
Molecular Weight (calculated)
18423.8 Da
IEP (calculated)
5.284
GRAVY (calculated)
-0.613
Length
159 amino acids
Sequence
(BLAST)
001: MGLKSKLSAQ IEVKAKNDVF HDAFRHKPHH ISTMTPVHVQ GCDCLEGDFG TVGSKICWKY THDGKEKFSK QIIESINEEK KIITFKEFEG DIVNEYDNWK
101: VSLHVDEEGE KDLVSWTMEY ERPNENVPEL TSLLQFFIDM TKSIDDHHVC NKPIDNIIN
Best Arabidopsis Sequence Match ( AT5G28010.2 )
(BLAST)
001: MAEKVEVTTM PKSSLLGKLE VEVEIKAPAA IFYHIYAGRP HHVAKATPRN VQSCDLHDGE WGTVGSIVYW NYVHEGQAKV AKERIELVEP EKKLIKFRVI
101: EGDVMAEYKS FLITIQVTPK EGGTGSVVKW HIEYEKIDEN VPHPENLLPF FAEMTKEIDE HLLSEE
Arabidopsis Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K5S5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.