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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, secretory
BaCelLo:secretory
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400030176
PGSC0003DMT400030222
PGSC0003DMT400055428

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 PGSC0003DMT400030176 AT5G43080.1 20706207
AT1G70830.1 PGSC0003DMT400030222 AT5G43080.1 20706207
AT1G70830.1 PGSC0003DMT400055428 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400031542 Potato cytosol 93.33 73.2
PGSC0003DMT400073915 Potato cytosol 92.5 72.55
PGSC0003DMT400022721 Potato cytosol 91.67 71.9
Solyc07g008710.2.1 Tomato cytosol, extracellular, nucleus 87.5 66.04
PGSC0003DMT400021866 Potato cytosol 72.5 57.24
PGSC0003DMT400025419 Potato cytosol 57.5 52.27
PGSC0003DMT400021868 Potato cytosol 65.0 52.0
PGSC0003DMT400021867 Potato cytosol 65.0 51.32
PGSC0003DMT400004549 Potato cytosol 63.33 50.0
PGSC0003DMT400025429 Potato cytosol 60.83 48.67
PGSC0003DMT400025420 Potato cytosol 60.0 47.68
PGSC0003DMT400041446 Potato cytosol 56.67 45.33
PGSC0003DMT400075925 Potato cytosol 40.83 42.24
PGSC0003DMT400056811 Potato cytosol 42.5 39.53
PGSC0003DMT400041449 Potato cytosol 36.67 38.6
PGSC0003DMT400022679 Potato cytosol 43.33 34.44
PGSC0003DMT400041455 Potato cytosol 43.33 34.44
PGSC0003DMT400077743 Potato cytosol 42.5 33.77
PGSC0003DMT400031386 Potato cytosol 41.67 33.11
VIT_01s0011g05150.t01 Wine grape cytosol 36.67 31.88
VIT_01s0011g05190.t01 Wine grape cytosol 39.17 31.13
AT1G70890.1 Thale cress cytosol 40.83 31.01
PGSC0003DMT400044158 Potato cytosol 36.67 30.56
AT5G28010.2 Thale cress cytosol 41.67 30.12
AT5G28000.1 Thale cress cytosol 39.17 28.66
AT1G35310.1 Thale cress cytosol 35.83 28.48
AT1G35260.1 Thale cress cytosol 35.83 28.29
CDY12485 Canola cytosol 23.33 28.28
CDY41465 Canola cytosol 36.67 28.03
Bra016364.1-P Field mustard cytosol 36.67 28.03
CDX91696 Canola cytosol 36.67 28.03
CDX89696 Canola cytosol 35.0 27.81
CDY17433 Canola cytosol 35.0 27.81
PGSC0003DMT400091938 Potato cytosol 35.0 27.1
Bra012362.1-P Field mustard cytosol 35.83 26.88
Bra016180.1-P Field mustard cytosol 30.83 26.81
CDX72752 Canola cytosol 30.83 26.81
Bra007947.1-P Field mustard cytosol 35.0 26.58
KRH13947 Soybean cytosol 34.17 26.45
AT1G70880.1 Thale cress cytosol 35.0 26.42
CDY12484 Canola cytosol 35.0 26.25
CDY03715 Canola cytosol 35.83 26.22
CDY65619 Canola cytosol 35.83 26.22
Bra016181.1-P Field mustard cytosol 30.0 26.09
CDY12480 Canola cytosol 35.0 26.09
CDX96283 Canola cytosol 30.0 26.09
CDY09495 Canola cytosol 34.17 25.95
VIT_01s0011g05180.t01 Wine grape cytosol 32.5 25.83
KRH37979 Soybean cytosol 33.33 25.81
Bra012364.1-P Field mustard cytosol 34.17 25.79
CDY25772 Canola cytosol 34.17 25.79
AT1G70840.1 Thale cress cytosol 36.67 25.73
Bra007946.1-P Field mustard cytosol 29.17 25.55
CDY09499 Canola cytosol 29.17 25.55
Bra016362.1-P Field mustard cytosol 34.17 25.47
CDY41463 Canola cytosol 34.17 25.47
Bra024564.1-P Field mustard cytosol 38.33 25.27
CDY21418 Canola cytosol 38.33 25.27
Bra012361.1-P Field mustard cytosol 29.17 25.18
Bra003939.1-P Field mustard cytosol 34.17 25.15
CDX68328 Canola cytosol 34.17 25.0
CDY12482 Canola cytosol 25.83 24.8
CDY23474 Canola cytosol 33.33 24.54
KRH13946 Soybean cytosol 31.67 24.52
PGSC0003DMT400059724 Potato cytosol 43.33 24.07
AT1G23130.1 Thale cress cytosol 31.67 23.75
Bra002309.1-P Field mustard cytosol 26.67 23.7
CDY16542 Canola cytosol 26.67 23.7
Bra016178.1-P Field mustard cytosol 30.83 23.42
CDY03713 Canola cytosol 30.0 23.38
CDX92456 Canola cytosol 25.83 22.96
CDX72753 Canola cytosol 30.0 22.78
Bra016182.1-P Field mustard cytosol 38.33 22.12
Bra016179.1-P Field mustard cytosol 26.67 21.77
AT1G70860.2 Thale cress cytosol 12.5 20.0
CDY00801 Canola cytosol 29.17 19.77
CDY09492 Canola cytosol 37.5 19.65
CDY03718 Canola cytosol 37.5 19.65
Bra007945.1-P Field mustard cytosol 37.5 19.65
CDY25771 Canola cytosol 25.83 19.5
Bra012363.1-P Field mustard cytosol 25.83 19.25
CDY70076 Canola cytosol 21.67 17.93
KRH13944 Soybean cytosol 20.83 17.86
CDY68859 Canola cytosol 20.83 17.24
VIT_01s0011g05170.t01 Wine grape cytosol 9.17 17.19
PGSC0003DMT400020053 Potato cytosol 40.83 16.55
PGSC0003DMT400075928 Potato cytosol 40.0 16.16
AT1G70850.1 Thale cress cytosol 40.0 15.19
Bra007949.1-P Field mustard cytosol 31.67 15.08
CDX96282 Canola cytosol 13.33 13.11
AT1G70830.1 Thale cress cytosol 35.83 12.84
CDY11541 Canola cytosol 13.33 10.32
Protein Annotations
EnsemblPlants:PGSC0003DMT400073916EnsemblPlantsGene:PGSC0003DMG400028725Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31907PANTHER:PTHR31907:SF4
PFAM:PF00407PGSC:PGSC0003DMG400028725SEG:segSMART:SM01037SUPFAM:SSF55961UniParc:UPI0002958CB4
UniProt:M1CSU7MapMan:35.2::::
Description
Major latex [Source:PGSC_GENE;Acc:PGSC0003DMG400028725]
Coordinates
chr7:+:6324551..6325361
Molecular Weight (calculated)
14094.6 Da
IEP (calculated)
4.402
GRAVY (calculated)
-0.626
Length
120 amino acids
Sequence
(BLAST)
001: MCPVHVQGCE CLEGDFETIG SKICWKYTHD GKEKFLKQII EAIDEEKKII TFKEFEGDVV NEYENWKVSL HVAEEGEKDL VSWTMEYERP NENVPELTNL
101: LQFFIDMTKS IDDHHVNKPN
Best Arabidopsis Sequence Match ( AT5G28010.1 )
(BLAST)
001: MAEKVEVTTM PKSSLLGKLE VEVEIKAPAA IFYHIYAGRP HHVAKATPRN VQSCDLHDGE WGTVGSIVYW NYVHEGQAKV AKERIELVEP EKKLIKFRVI
101: EGDVMAEYKS FLITIQVTPK EGGTGSVVKW HIEYEKIDEN VPHPENLLPF FAEMTKEIDE HLLSEE
Arabidopsis Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K5S5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.