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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400030176
PGSC0003DMT400030222
PGSC0003DMT400055428

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 PGSC0003DMT400030176 AT5G43080.1 20706207
AT1G70830.1 PGSC0003DMT400030222 AT5G43080.1 20706207
AT1G70830.1 PGSC0003DMT400055428 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g014580.2.1 Tomato cytosol 92.11 92.11
PGSC0003DMT400021868 Potato cytosol 85.53 86.67
PGSC0003DMT400021867 Potato cytosol 84.87 84.87
PGSC0003DMT400004549 Potato cytosol 82.89 82.89
PGSC0003DMT400025429 Potato cytosol 75.0 76.0
PGSC0003DMT400041446 Potato cytosol 75.0 76.0
PGSC0003DMT400025420 Potato cytosol 75.0 75.5
PGSC0003DMT400041449 Potato cytosol 54.61 72.81
PGSC0003DMT400031542 Potato cytosol 73.03 72.55
PGSC0003DMT400073916 Potato cytosol 57.24 72.5
PGSC0003DMT400073915 Potato cytosol 71.71 71.24
PGSC0003DMT400022721 Potato cytosol 71.05 70.59
PGSC0003DMT400025419 Potato cytosol 61.18 70.45
PGSC0003DMT400056811 Potato cytosol 40.79 48.06
PGSC0003DMT400077743 Potato cytosol 46.71 47.02
PGSC0003DMT400022679 Potato cytosol 46.05 46.36
PGSC0003DMT400041455 Potato cytosol 45.39 45.7
VIT_01s0011g05170.t01 Wine grape cytosol 18.42 43.75
PGSC0003DMT400031386 Potato cytosol 42.11 42.38
VIT_01s0011g05190.t01 Wine grape cytosol 40.79 41.06
PGSC0003DMT400091938 Potato cytosol 40.79 40.0
PGSC0003DMT400075925 Potato cytosol 28.95 37.93
VIT_01s0011g05180.t01 Wine grape cytosol 37.5 37.75
VIT_01s0011g05150.t01 Wine grape cytosol 34.21 37.68
AT1G70890.1 Thale cress cytosol 38.16 36.71
AT5G28010.2 Thale cress cytosol 38.82 35.54
PGSC0003DMT400044158 Potato cytosol 32.24 34.03
CDY09495 Canola cytosol 34.87 33.54
AT1G70860.2 Thale cress cytosol 16.45 33.33
Bra012362.1-P Field mustard cytosol 34.87 33.12
Bra016364.1-P Field mustard cytosol 34.21 33.12
CDY41465 Canola cytosol 34.21 33.12
KRH13947 Soybean cytosol 33.55 32.9
AT1G70840.1 Thale cress cytosol 36.84 32.75
CDY12484 Canola cytosol 34.21 32.5
CDX91696 Canola cytosol 33.55 32.48
CDX89696 Canola cytosol 32.24 32.45
CDY12485 Canola cytosol 21.05 32.32
AT5G28000.1 Thale cress cytosol 34.87 32.32
CDY65619 Canola cytosol 34.87 32.32
CDY03715 Canola cytosol 34.87 32.32
KRH37979 Soybean cytosol 32.89 32.26
AT1G35260.1 Thale cress cytosol 32.24 32.24
AT1G35310.1 Thale cress cytosol 31.58 31.79
CDY17433 Canola cytosol 31.58 31.79
Bra012364.1-P Field mustard cytosol 32.89 31.45
AT1G70880.1 Thale cress cytosol 32.89 31.45
CDY25772 Canola cytosol 32.89 31.45
Bra007946.1-P Field mustard cytosol 28.29 31.39
Bra003939.1-P Field mustard cytosol 33.55 31.29
Bra007947.1-P Field mustard cytosol 32.24 31.01
Bra012361.1-P Field mustard cytosol 28.29 30.94
CDY23474 Canola cytosol 32.89 30.67
CDY03713 Canola cytosol 30.92 30.52
CDX68328 Canola cytosol 32.89 30.49
CDY41463 Canola cytosol 32.24 30.43
Bra016362.1-P Field mustard cytosol 32.24 30.43
CDY12480 Canola cytosol 32.24 30.43
KRH13946 Soybean cytosol 30.92 30.32
PGSC0003DMT400059724 Potato cytosol 42.76 30.09
CDY09499 Canola cytosol 26.97 29.93
Bra016180.1-P Field mustard cytosol 26.97 29.71
CDY21418 Canola cytosol 34.87 29.12
Bra024564.1-P Field mustard cytosol 34.87 29.12
CDX72752 Canola cytosol 26.32 28.99
CDY16542 Canola cytosol 25.66 28.89
AT1G23130.1 Thale cress cytosol 30.26 28.75
KRH13944 Soybean cytosol 26.32 28.57
Bra016181.1-P Field mustard cytosol 25.66 28.26
CDX96283 Canola cytosol 25.66 28.26
Bra016179.1-P Field mustard cytosol 26.97 27.89
Bra016182.1-P Field mustard cytosol 38.16 27.88
CDY00801 Canola cytosol 32.24 27.68
CDX92456 Canola cytosol 24.34 27.41
Bra002309.1-P Field mustard cytosol 24.34 27.41
Bra016178.1-P Field mustard cytosol 27.63 26.58
CDY12482 Canola cytosol 21.71 26.4
CDX72753 Canola cytosol 26.97 25.95
CDY25771 Canola cytosol 26.32 25.16
Bra012363.1-P Field mustard cytosol 26.32 24.84
CDX96282 Canola cytosol 19.74 24.59
CDY09492 Canola cytosol 36.84 24.45
Bra007945.1-P Field mustard cytosol 36.84 24.45
CDY03718 Canola cytosol 36.84 24.45
PGSC0003DMT400020053 Potato cytosol 42.11 21.62
PGSC0003DMT400075928 Potato cytosol 42.11 21.55
CDY70076 Canola cytosol 20.39 21.38
CDY68859 Canola cytosol 19.08 20.0
CDY11541 Canola cytosol 19.74 19.35
Bra007949.1-P Field mustard cytosol 30.92 18.65
AT1G70850.1 Thale cress cytosol 37.5 18.04
AT1G70830.1 Thale cress cytosol 34.87 15.82
Protein Annotations
EnsemblPlants:PGSC0003DMT400021866EnsemblPlantsGene:PGSC0003DMG400008485Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31907PANTHER:PTHR31907:SF4
PFAM:PF00407PGSC:PGSC0003DMG400008485SMART:SM01037SUPFAM:SSF55961UniParc:UPI0002968661UniProt:M1AFT0
MapMan:35.1:::::
Description
Major latex [Source:PGSC_GENE;Acc:PGSC0003DMG400008485]
Coordinates
chr9:+:109841..110859
Molecular Weight (calculated)
17540.3 Da
IEP (calculated)
5.288
GRAVY (calculated)
-0.238
Length
152 amino acids
Sequence
(BLAST)
001: MGLKSVLCAK IEMKANKDVF YDVFTNKPHH VSIMCPFHVQ GCELLEGVFG TVGSKICWTY TLEGKEKISK QVIETIDEEK KVITFKEFEG DLVNKYDNWK
101: ATLHIETKGE IDLVSWTMEY ERPNENVPEL INLLDFIIGM TKVVDDHHVK MN
Best Arabidopsis Sequence Match ( AT5G28010.1 )
(BLAST)
001: MAEKVEVTTM PKSSLLGKLE VEVEIKAPAA IFYHIYAGRP HHVAKATPRN VQSCDLHDGE WGTVGSIVYW NYVHEGQAKV AKERIELVEP EKKLIKFRVI
101: EGDVMAEYKS FLITIQVTPK EGGTGSVVKW HIEYEKIDEN VPHPENLLPF FAEMTKEIDE HLLSEE
Arabidopsis Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K5S5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.