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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400030176
PGSC0003DMT400030222
PGSC0003DMT400055428

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 PGSC0003DMT400030176 AT5G43080.1 20706207
AT1G70830.1 PGSC0003DMT400030222 AT5G43080.1 20706207
AT1G70830.1 PGSC0003DMT400055428 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400031386 Potato cytosol 68.1 52.32
PGSC0003DMT400056811 Potato cytosol 50.0 44.96
PGSC0003DMT400059724 Potato cytosol 76.72 41.2
PGSC0003DMT400073916 Potato cytosol 42.24 40.83
CDY12485 Canola cytosol 33.62 39.39
PGSC0003DMT400022679 Potato cytosol 50.86 39.07
VIT_01s0011g05150.t01 Wine grape cytosol 44.83 37.68
PGSC0003DMT400041455 Potato cytosol 48.28 37.09
PGSC0003DMT400077743 Potato cytosol 47.41 36.42
PGSC0003DMT400031542 Potato cytosol 44.83 33.99
VIT_01s0011g05190.t01 Wine grape cytosol 43.97 33.77
PGSC0003DMT400044158 Potato cytosol 41.38 33.33
KRH13947 Soybean cytosol 43.97 32.9
PGSC0003DMT400073915 Potato cytosol 43.1 32.68
PGSC0003DMT400022721 Potato cytosol 42.24 32.03
CDY12482 Canola cytosol 33.62 31.2
PGSC0003DMT400025419 Potato cytosol 35.34 31.06
Bra007947.1-P Field mustard cytosol 42.24 31.01
AT1G70890.1 Thale cress cytosol 41.38 30.38
PGSC0003DMT400020053 Potato cytosol 76.72 30.07
CDY41465 Canola cytosol 40.52 29.94
Bra016364.1-P Field mustard cytosol 40.52 29.94
AT5G28000.1 Thale cress cytosol 41.38 29.27
VIT_01s0011g05180.t01 Wine grape cytosol 37.93 29.14
CDY09495 Canola cytosol 39.66 29.11
PGSC0003DMT400091938 Potato cytosol 38.79 29.03
PGSC0003DMT400021866 Potato cytosol 37.93 28.95
CDX91696 Canola cytosol 38.79 28.66
CDY09499 Canola cytosol 33.62 28.47
KRH37979 Soybean cytosol 37.93 28.39
AT5G28010.2 Thale cress cytosol 40.52 28.31
Bra012362.1-P Field mustard cytosol 38.79 28.12
AT1G70840.1 Thale cress cytosol 41.38 28.07
Bra024564.1-P Field mustard cytosol 43.97 28.02
CDY21418 Canola cytosol 43.97 28.02
PGSC0003DMT400025429 Potato cytosol 36.21 28.0
KRH13946 Soybean cytosol 37.07 27.74
PGSC0003DMT400004549 Potato cytosol 36.21 27.63
CDY65619 Canola cytosol 38.79 27.44
PGSC0003DMT400021868 Potato cytosol 35.34 27.33
PGSC0003DMT400025420 Potato cytosol 35.34 27.15
CDY23474 Canola cytosol 37.93 26.99
Bra003939.1-P Field mustard cytosol 37.93 26.99
CDY12484 Canola cytosol 37.07 26.88
CDY03715 Canola cytosol 37.93 26.83
CDX68328 Canola cytosol 37.93 26.83
Bra016178.1-P Field mustard cytosol 36.21 26.58
AT1G70880.1 Thale cress cytosol 36.21 26.42
AT1G35260.1 Thale cress cytosol 34.48 26.32
Bra007946.1-P Field mustard cytosol 31.03 26.28
CDX72753 Canola cytosol 35.34 25.95
PGSC0003DMT400075928 Potato cytosol 66.38 25.93
CDX89696 Canola cytosol 33.62 25.83
PGSC0003DMT400041446 Potato cytosol 32.76 25.33
Bra012361.1-P Field mustard cytosol 30.17 25.18
Bra016179.1-P Field mustard cytosol 31.9 25.17
PGSC0003DMT400021867 Potato cytosol 32.76 25.0
CDY25771 Canola cytosol 33.62 24.53
AT1G35310.1 Thale cress cytosol 31.9 24.5
Bra012363.1-P Field mustard cytosol 33.62 24.22
PGSC0003DMT400041449 Potato cytosol 23.28 23.68
Bra016362.1-P Field mustard cytosol 32.76 23.6
CDY41463 Canola cytosol 32.76 23.6
CDY12480 Canola cytosol 32.76 23.6
CDY70076 Canola cytosol 29.31 23.45
CDY17433 Canola cytosol 30.17 23.18
AT1G23130.1 Thale cress cytosol 31.9 23.12
Bra016182.1-P Field mustard cytosol 40.52 22.6
CDX72752 Canola cytosol 26.72 22.46
Bra016180.1-P Field mustard cytosol 26.72 22.46
CDY03713 Canola cytosol 29.31 22.08
CDY68859 Canola cytosol 27.59 22.07
Bra012364.1-P Field mustard cytosol 30.17 22.01
CDY25772 Canola cytosol 30.17 22.01
CDX96283 Canola cytosol 25.86 21.74
Bra016181.1-P Field mustard cytosol 25.86 21.74
CDY00801 Canola cytosol 32.76 21.47
KRH13944 Soybean cytosol 25.0 20.71
CDY16542 Canola cytosol 23.28 20.0
CDY03718 Canola cytosol 38.79 19.65
Bra007945.1-P Field mustard cytosol 38.79 19.65
CDY09492 Canola cytosol 38.79 19.65
VIT_01s0011g05170.t01 Wine grape cytosol 10.34 18.75
AT1G70860.2 Thale cress cytosol 12.07 18.67
Bra002309.1-P Field mustard cytosol 20.69 17.78
CDX92456 Canola cytosol 20.69 17.78
Bra007949.1-P Field mustard cytosol 35.34 16.27
AT1G70850.1 Thale cress cytosol 43.1 15.82
AT1G70830.1 Thale cress cytosol 38.79 13.43
CDX96282 Canola cytosol 12.07 11.48
CDY11541 Canola cytosol 13.79 10.32
Protein Annotations
EnsemblPlants:PGSC0003DMT400075925EnsemblPlantsGene:PGSC0003DMG400029523Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31907PANTHER:PTHR31907:SF4
PFAM:PF00407PGSC:PGSC0003DMG400029523SMART:SM01037SUPFAM:SSF55961UniParc:UPI0002962B4FUniProt:M1CVY7
MapMan:35.1:::::
Description
Major latex [Source:PGSC_GENE;Acc:PGSC0003DMG400029523]
Coordinates
chr4:+:2478842..2479386
Molecular Weight (calculated)
13461.9 Da
IEP (calculated)
4.612
GRAVY (calculated)
-0.493
Length
116 amino acids
Sequence
(BLAST)
001: MCDKIQNVDI HEDEWETVGS VLSWYFIHDG KEKVAKDIIE AIDEEKKLVK FKVTGGDILE EYKACSFTVH VESKGENNLV TWIAEYEKKN VNVPDPHTYM
101: ELLLNISKDI ETHHLN
Best Arabidopsis Sequence Match ( AT5G28010.1 )
(BLAST)
001: MAEKVEVTTM PKSSLLGKLE VEVEIKAPAA IFYHIYAGRP HHVAKATPRN VQSCDLHDGE WGTVGSIVYW NYVHEGQAKV AKERIELVEP EKKLIKFRVI
101: EGDVMAEYKS FLITIQVTPK EGGTGSVVKW HIEYEKIDEN VPHPENLLPF FAEMTKEIDE HLLSEE
Arabidopsis Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K5S5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.