Factsheet for PGSC0003DMT400020053

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400030176
PGSC0003DMT400030222
PGSC0003DMT400055428

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70830.1	PGSC0003DMT400030176	AT5G43080.1	20706207
AT1G70830.1	PGSC0003DMT400030222	AT5G43080.1	20706207
AT1G70830.1	PGSC0003DMT400055428	AT5G43080.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059724	Potato	cytosol	70.27	96.3
PGSC0003DMT400075925	Potato	cytosol	30.07	76.72
PGSC0003DMT400075928	Potato	cytosol	75.34	75.08
PGSC0003DMT400031386	Potato	cytosol	37.5	73.51
VIT_01s0011g05170.t01	Wine grape	cytosol	11.15	51.56
PGSC0003DMT400056811	Potato	cytosol	21.62	49.61
PGSC0003DMT400077743	Potato	cytosol	24.66	48.34
VIT_01s0011g05150.t01	Wine grape	cytosol	22.3	47.83
PGSC0003DMT400022679	Potato	cytosol	24.32	47.68
VIT_01s0011g05190.t01	Wine grape	cytosol	24.32	47.68
PGSC0003DMT400041455	Potato	cytosol	24.32	47.68
PGSC0003DMT400031542	Potato	cytosol	24.32	47.06
PGSC0003DMT400073915	Potato	cytosol	23.65	45.75
PGSC0003DMT400022721	Potato	cytosol	23.31	45.1
PGSC0003DMT400025429	Potato	cytosol	22.64	44.67
CDY12485	Canola	cytosol	14.86	44.44
VIT_01s0011g05180.t01	Wine grape	cytosol	22.64	44.37
PGSC0003DMT400025420	Potato	cytosol	22.3	43.71
KRH13947	Soybean	cytosol	22.64	43.23
PGSC0003DMT400041449	Potato	cytosol	16.55	42.98
PGSC0003DMT400025419	Potato	cytosol	18.92	42.42
AT1G70890.1	Thale cress	cytosol	22.64	42.41
PGSC0003DMT400021866	Potato	cytosol	21.62	42.11
PGSC0003DMT400021868	Potato	cytosol	21.28	42.0
Bra007947.1-P	Field mustard	cytosol	21.96	41.14
CDY09495	Canola	cytosol	21.96	41.14
PGSC0003DMT400073916	Potato	cytosol	16.55	40.83
CDY03715	Canola	cytosol	22.3	40.24
CDY65619	Canola	cytosol	22.3	40.24
Bra007946.1-P	Field mustard	cytosol	18.58	40.15
PGSC0003DMT400004549	Potato	cytosol	20.61	40.13
Bra016364.1-P	Field mustard	cytosol	21.28	40.13
CDY41465	Canola	cytosol	21.28	40.13
CDX91696	Canola	cytosol	20.95	39.49
PGSC0003DMT400041446	Potato	cytosol	19.93	39.33
AT5G28010.2	Thale cress	cytosol	21.96	39.16
PGSC0003DMT400091938	Potato	cytosol	20.27	38.71
AT1G70860.2	Thale cress	cytosol	9.8	38.67
CDY23474	Canola	cytosol	21.28	38.65
Bra003939.1-P	Field mustard	cytosol	21.28	38.65
CDX68328	Canola	cytosol	21.28	38.41
PGSC0003DMT400021867	Potato	cytosol	19.59	38.16
Bra012362.1-P	Field mustard	cytosol	20.61	38.12
AT1G70840.1	Thale cress	cytosol	21.96	38.01
KRH37979	Soybean	cytosol	19.59	37.42
AT5G28000.1	Thale cress	cytosol	20.61	37.2
CDY12484	Canola	cytosol	19.93	36.88
CDY09499	Canola	cytosol	16.89	36.5
KRH13946	Soybean	cytosol	18.92	36.13
AT1G70880.1	Thale cress	cytosol	19.26	35.85
Bra016178.1-P	Field mustard	cytosol	18.92	35.44
Bra016179.1-P	Field mustard	cytosol	17.57	35.37
Bra012361.1-P	Field mustard	cytosol	16.55	35.25
CDY03713	Canola	cytosol	18.24	35.06
CDX72753	Canola	cytosol	18.58	34.81
PGSC0003DMT400044158	Potato	cytosol	16.55	34.03
AT1G23130.1	Thale cress	cytosol	17.91	33.12
CDY21418	Canola	cytosol	20.27	32.97
Bra024564.1-P	Field mustard	cytosol	20.27	32.97
CDY12482	Canola	cytosol	13.85	32.8
AT1G35260.1	Thale cress	cytosol	16.55	32.24
CDY41463	Canola	cytosol	17.23	31.68
Bra016362.1-P	Field mustard	cytosol	17.23	31.68
Bra012364.1-P	Field mustard	cytosol	16.89	31.45
CDY25772	Canola	cytosol	16.89	31.45
Bra016182.1-P	Field mustard	cytosol	21.96	31.25
CDY12480	Canola	cytosol	16.89	31.06
CDY70076	Canola	cytosol	15.2	31.03
CDY00801	Canola	cytosol	18.24	30.51
AT1G35310.1	Thale cress	cytosol	15.54	30.46
CDX89696	Canola	cytosol	15.54	30.46
CDY68859	Canola	cytosol	14.86	30.34
Bra016180.1-P	Field mustard	cytosol	13.85	29.71
CDX72752	Canola	cytosol	13.51	28.99
CDY03718	Canola	cytosol	22.3	28.82
CDY09492	Canola	cytosol	22.3	28.82
Bra007945.1-P	Field mustard	cytosol	22.3	28.82
KRH13944	Soybean	cytosol	13.51	28.57
CDY17433	Canola	cytosol	14.53	28.48
CDY25771	Canola	cytosol	14.86	27.67
Bra016181.1-P	Field mustard	cytosol	12.84	27.54
CDX96283	Canola	cytosol	12.84	27.54
Bra012363.1-P	Field mustard	cytosol	14.86	27.33
CDY16542	Canola	cytosol	11.82	25.93
CDX96282	Canola	cytosol	10.14	24.59
CDX92456	Canola	cytosol	11.15	24.44
Bra002309.1-P	Field mustard	cytosol	11.15	24.44
Bra007949.1-P	Field mustard	cytosol	19.93	23.41
CDY11541	Canola	cytosol	11.49	21.94
AT1G70850.1	Thale cress	cytosol	20.95	19.62
AT1G70830.1	Thale cress	cytosol	21.96	19.4

Protein Annotations

EnsemblPlants:PGSC0003DMT400020053	EnsemblPlantsGene:PGSC0003DMG400007760	EntrezGene:102594120	Gene3D:3.30.530.20	GO:GO:0006950	GO:GO:0006952
GO:GO:0008150	GO:GO:0009607	InterPro:Bet_v_I/MLP	InterPro:IPR023393	InterPro:START-like_dom_sf	PANTHER:PTHR31907
PANTHER:PTHR31907:SF4	PFAM:PF00407	PGSC:PGSC0003DMG400007760	RefSeq:XP_006367964.1	SEG:seg	SMART:SM01037
SUPFAM:SSF55961	UniParc:UPI0002948D1D	UniProt:M1ACY1	MapMan:35.1	:	:

Description

Bet v I allergen family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007760]

Coordinates

chr00:-:33872554..33875876

Molecular Weight (calculated)

34315.7 Da

IEP (calculated)

5.147

GRAVY (calculated)

-0.445

Length

296 amino acids

Sequence
(BLAST)

001: MSLEGKLVSE INIKCDGDVF HEIFRHRPHH ISTMSSDKIQ NVDIHEGEWG TVGSVIFWNF THDGKEKVAK EIIQEIDEEK KLVKFKVIGG DILDYYKSFY
101: ITVHVETKGE DNLVTWILEY EKLNQDIPDP HTLMKFCLDV TKDIETHHLT GKLVSEINIK SDGDVFHEIF RYRPHHISSM SPGYIQNVDI HEGEWGTVGS
201: VIVWNFTHDG KEKVAKNVVE EIDEEKKLVK FKVTGGDILE DYNSFYLTVH VETKGEDNIV TWILEYEKRN CNVPDPHTLM ELCLNITKDI ETHHLN

Best Arabidopsis Sequence Match ( AT1G70830.1 )
(BLAST)

001: MADVATKHPM EDEVKKTEAS SLVGKLETDV EIKASADKFH HMFAGKPHHV SKASPGNIQG CDLHEGDWGT VGSIVFWNYV HDGEAKVAKE RIEAVEPDKN
101: LITFRVIEGD LMKEYKSFLL TIQVTPKPGG PGSIVHWHLE YEKISEEVAH PETLLQFCVE VSKEIDEHLL AEEEEVKTPE TPSLVGKLET DVEIKASAEK
201: FHHMFAGKPH HVSKASPGNI QGCDLHEGDW GQVGSIVFWN YVHDREAKVA KERIEAVEPN KNLITFRVID GDLMKEYKSF LLTIQVTPKL GGPGSIVHWH
301: LEYEKISEEV AHPETLLQFC VEVSKEIDEH LLAEE

Arabidopsis Description

MLP28MLP-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.