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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400030176
PGSC0003DMT400030222
PGSC0003DMT400055428

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 PGSC0003DMT400030176 AT5G43080.1 20706207
AT1G70830.1 PGSC0003DMT400030222 AT5G43080.1 20706207
AT1G70830.1 PGSC0003DMT400055428 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400073915 Potato cytosol 96.73 96.73
PGSC0003DMT400022721 Potato cytosol 96.08 96.08
PGSC0003DMT400073916 Potato cytosol 73.2 93.33
Solyc07g008710.2.1 Tomato cytosol, extracellular, nucleus 91.5 88.05
PGSC0003DMT400021866 Potato cytosol 72.55 73.03
PGSC0003DMT400021868 Potato cytosol 67.32 68.67
PGSC0003DMT400021867 Potato cytosol 66.67 67.11
PGSC0003DMT400025429 Potato cytosol 64.05 65.33
PGSC0003DMT400025420 Potato cytosol 63.4 64.24
PGSC0003DMT400004549 Potato cytosol 63.4 63.82
PGSC0003DMT400041446 Potato cytosol 60.78 62.0
PGSC0003DMT400041449 Potato cytosol 45.75 61.4
PGSC0003DMT400025419 Potato cytosol 52.94 61.36
PGSC0003DMT400022679 Potato cytosol 47.06 47.68
PGSC0003DMT400077743 Potato cytosol 45.75 46.36
PGSC0003DMT400041455 Potato cytosol 45.75 46.36
PGSC0003DMT400056811 Potato cytosol 38.56 45.74
PGSC0003DMT400075925 Potato cytosol 33.99 44.83
PGSC0003DMT400031386 Potato cytosol 43.79 44.37
VIT_01s0011g05170.t01 Wine grape cytosol 18.3 43.75
VIT_01s0011g05190.t01 Wine grape cytosol 43.14 43.71
AT1G70890.1 Thale cress cytosol 42.48 41.14
PGSC0003DMT400091938 Potato cytosol 41.18 40.65
VIT_01s0011g05150.t01 Wine grape cytosol 35.95 39.86
AT5G28010.2 Thale cress cytosol 40.52 37.35
CDY65619 Canola cytosol 39.87 37.2
CDY03715 Canola cytosol 39.87 37.2
VIT_01s0011g05180.t01 Wine grape cytosol 36.6 37.09
Bra007947.1-P Field mustard cytosol 37.91 36.71
Bra003939.1-P Field mustard cytosol 38.56 36.2
AT1G35260.1 Thale cress cytosol 35.95 36.18
CDY09495 Canola cytosol 37.25 36.08
CDX68328 Canola cytosol 38.56 35.98
Bra007946.1-P Field mustard cytosol 32.03 35.77
CDX89696 Canola cytosol 35.29 35.76
AT1G70840.1 Thale cress cytosol 39.87 35.67
CDY23474 Canola cytosol 37.91 35.58
AT1G35310.1 Thale cress cytosol 34.64 35.1
CDY09499 Canola cytosol 31.37 35.04
Bra016364.1-P Field mustard cytosol 35.95 35.03
CDY41465 Canola cytosol 35.95 35.03
CDX91696 Canola cytosol 35.95 35.03
AT1G70860.2 Thale cress cytosol 16.99 34.67
PGSC0003DMT400059724 Potato cytosol 48.37 34.26
AT1G70880.1 Thale cress cytosol 35.29 33.96
CDY03713 Canola cytosol 33.99 33.77
CDY12480 Canola cytosol 35.29 33.54
CDY12485 Canola cytosol 21.57 33.33
Bra012362.1-P Field mustard cytosol 34.64 33.12
CDY17433 Canola cytosol 32.68 33.11
CDY25772 Canola cytosol 33.99 32.7
Bra012364.1-P Field mustard cytosol 33.99 32.7
CDY12484 Canola cytosol 33.99 32.5
Bra016362.1-P Field mustard cytosol 33.99 32.3
CDY41463 Canola cytosol 33.99 32.3
Bra016180.1-P Field mustard cytosol 28.76 31.88
Bra016181.1-P Field mustard cytosol 28.76 31.88
CDX96283 Canola cytosol 28.76 31.88
AT1G23130.1 Thale cress cytosol 33.33 31.88
CDY16542 Canola cytosol 28.1 31.85
AT5G28000.1 Thale cress cytosol 33.99 31.71
Bra012361.1-P Field mustard cytosol 28.76 31.65
KRH13947 Soybean cytosol 32.03 31.61
KRH37979 Soybean cytosol 32.03 31.61
CDX72752 Canola cytosol 28.1 31.16
Bra016178.1-P Field mustard cytosol 32.03 31.01
Bra024564.1-P Field mustard cytosol 36.6 30.77
CDY21418 Canola cytosol 36.6 30.77
CDX72753 Canola cytosol 31.37 30.38
KRH13946 Soybean cytosol 30.72 30.32
PGSC0003DMT400044158 Potato cytosol 28.1 29.86
Bra002309.1-P Field mustard cytosol 26.14 29.63
CDY00801 Canola cytosol 33.99 29.38
Bra016182.1-P Field mustard cytosol 39.87 29.33
CDX92456 Canola cytosol 25.49 28.89
CDY12482 Canola cytosol 23.53 28.8
Bra016179.1-P Field mustard cytosol 27.45 28.57
CDY09492 Canola cytosol 41.18 27.51
CDY03718 Canola cytosol 41.18 27.51
Bra007945.1-P Field mustard cytosol 41.18 27.51
CDX96282 Canola cytosol 20.26 25.41
CDY25771 Canola cytosol 26.14 25.16
KRH13944 Soybean cytosol 22.88 25.0
Bra012363.1-P Field mustard cytosol 26.14 24.84
PGSC0003DMT400020053 Potato cytosol 47.06 24.32
PGSC0003DMT400075928 Potato cytosol 45.75 23.57
CDY70076 Canola cytosol 22.22 23.45
CDY68859 Canola cytosol 21.57 22.76
CDY11541 Canola cytosol 22.22 21.94
Bra007949.1-P Field mustard cytosol 34.64 21.03
AT1G70850.1 Thale cress cytosol 42.48 20.57
AT1G70830.1 Thale cress cytosol 40.52 18.51
Protein Annotations
EnsemblPlants:PGSC0003DMT400031542EnsemblPlantsGene:PGSC0003DMG400012100Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31907PANTHER:PTHR31907:SF4
PFAM:PF00407PGSC:PGSC0003DMG400012100SEG:segSMART:SM01037SUPFAM:SSF55961UniParc:UPI000296EF90
UniProt:M1AVU0MapMan:35.1::::
Description
Major latex [Source:PGSC_GENE;Acc:PGSC0003DMG400012100]
Coordinates
chr7:+:6258626..6259653
Molecular Weight (calculated)
17849.1 Da
IEP (calculated)
5.535
GRAVY (calculated)
-0.700
Length
153 amino acids
Sequence
(BLAST)
001: MGLKSKLCAQ IEVKAKNDVF HDAFRHKPHH VSTMCPVHIQ GCDRLEGDFG TVGSKICWKY THDGKEKFSK QIIEAIDEEK KIITFKEFEG DIVNEYENWK
101: VSLHVDEEGE KDLVSWTMEY ERPNENVPEL TNLLQFFIDM TKSIDDHHVN KPN
Best Arabidopsis Sequence Match ( AT5G28010.2 )
(BLAST)
001: MAEKVEVTTM PKSSLLGKLE VEVEIKAPAA IFYHIYAGRP HHVAKATPRN VQSCDLHDGE WGTVGSIVYW NYVHEGQAKV AKERIELVEP EKKLIKFRVI
101: EGDVMAEYKS FLITIQVTPK EGGTGSVVKW HIEYEKIDEN VPHPENLLPF FAEMTKEIDE HLLSEE
Arabidopsis Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K5S5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.