Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400030176 | |
| PGSC0003DMT400030222 | |
| PGSC0003DMT400055428 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G70830.1 | PGSC0003DMT400030176 | AT5G43080.1 | 20706207 |
| AT1G70830.1 | PGSC0003DMT400030222 | AT5G43080.1 | 20706207 |
| AT1G70830.1 | PGSC0003DMT400055428 | AT5G43080.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041446 | Potato | cytosol | 86.84 | 66.0 |
| PGSC0003DMT400025429 | Potato | cytosol | 85.09 | 64.67 |
| Solyc09g005410.1.1 | Tomato | cytosol | 75.44 | 63.24 |
| PGSC0003DMT400021868 | Potato | cytosol | 79.82 | 60.67 |
| PGSC0003DMT400025419 | Potato | cytosol | 69.3 | 59.85 |
| PGSC0003DMT400025420 | Potato | cytosol | 78.07 | 58.94 |
| PGSC0003DMT400021867 | Potato | cytosol | 78.07 | 58.55 |
| PGSC0003DMT400004549 | Potato | cytosol | 75.44 | 56.58 |
| PGSC0003DMT400021866 | Potato | cytosol | 72.81 | 54.61 |
| VIT_01s0011g05170.t01 | Wine grape | cytosol | 26.32 | 46.88 |
| PGSC0003DMT400031542 | Potato | cytosol | 61.4 | 45.75 |
| PGSC0003DMT400073915 | Potato | cytosol | 60.53 | 45.1 |
| PGSC0003DMT400022721 | Potato | cytosol | 59.65 | 44.44 |
| PGSC0003DMT400073916 | Potato | cytosol | 38.6 | 36.67 |
| AT1G70860.2 | Thale cress | cytosol | 23.68 | 36.0 |
| VIT_01s0011g05190.t01 | Wine grape | cytosol | 43.86 | 33.11 |
| PGSC0003DMT400077743 | Potato | cytosol | 42.11 | 31.79 |
| PGSC0003DMT400041455 | Potato | cytosol | 42.11 | 31.79 |
| PGSC0003DMT400022679 | Potato | cytosol | 42.11 | 31.79 |
| PGSC0003DMT400056811 | Potato | cytosol | 35.09 | 31.01 |
| PGSC0003DMT400091938 | Potato | cytosol | 39.47 | 29.03 |
| VIT_01s0011g05150.t01 | Wine grape | cytosol | 34.21 | 28.26 |
| VIT_01s0011g05180.t01 | Wine grape | cytosol | 36.84 | 27.81 |
| PGSC0003DMT400031386 | Potato | cytosol | 35.96 | 27.15 |
| CDY03713 | Canola | cytosol | 35.96 | 26.62 |
| Bra007947.1-P | Field mustard | cytosol | 36.84 | 26.58 |
| AT1G70890.1 | Thale cress | cytosol | 36.84 | 26.58 |
| CDX89696 | Canola | cytosol | 35.09 | 26.49 |
| AT1G23130.1 | Thale cress | cytosol | 36.84 | 26.25 |
| AT1G35310.1 | Thale cress | cytosol | 34.21 | 25.83 |
| AT1G70840.1 | Thale cress | cytosol | 38.6 | 25.73 |
| AT1G35260.1 | Thale cress | cytosol | 34.21 | 25.66 |
| CDY09495 | Canola | cytosol | 35.09 | 25.32 |
| CDY17433 | Canola | cytosol | 33.33 | 25.17 |
| AT1G70880.1 | Thale cress | cytosol | 35.09 | 25.16 |
| KRH13944 | Soybean | cytosol | 30.7 | 25.0 |
| CDY65619 | Canola | cytosol | 35.96 | 25.0 |
| CDY03715 | Canola | cytosol | 35.96 | 25.0 |
| Bra003939.1-P | Field mustard | cytosol | 35.09 | 24.54 |
| Bra012362.1-P | Field mustard | cytosol | 34.21 | 24.38 |
| CDY12484 | Canola | cytosol | 34.21 | 24.38 |
| CDY41465 | Canola | cytosol | 33.33 | 24.2 |
| Bra016364.1-P | Field mustard | cytosol | 33.33 | 24.2 |
| AT5G28010.2 | Thale cress | cytosol | 35.09 | 24.1 |
| CDY23474 | Canola | cytosol | 34.21 | 23.93 |
| KRH37979 | Soybean | cytosol | 32.46 | 23.87 |
| CDX68328 | Canola | cytosol | 34.21 | 23.78 |
| CDX96282 | Canola | cytosol | 25.44 | 23.77 |
| Bra012361.1-P | Field mustard | cytosol | 28.95 | 23.74 |
| CDX91696 | Canola | cytosol | 32.46 | 23.57 |
| CDY09499 | Canola | cytosol | 28.07 | 23.36 |
| Bra007946.1-P | Field mustard | cytosol | 28.07 | 23.36 |
| PGSC0003DMT400075925 | Potato | cytosol | 23.68 | 23.28 |
| Bra012364.1-P | Field mustard | cytosol | 32.46 | 23.27 |
| CDY25772 | Canola | cytosol | 32.46 | 23.27 |
| Bra016180.1-P | Field mustard | cytosol | 28.07 | 23.19 |
| Bra016178.1-P | Field mustard | cytosol | 31.58 | 22.78 |
| PGSC0003DMT400059724 | Potato | cytosol | 42.98 | 22.69 |
| KRH13947 | Soybean | cytosol | 30.7 | 22.58 |
| CDX72752 | Canola | cytosol | 27.19 | 22.46 |
| CDY12482 | Canola | cytosol | 24.56 | 22.4 |
| CDY12485 | Canola | cytosol | 19.3 | 22.22 |
| CDX72753 | Canola | cytosol | 30.7 | 22.15 |
| CDY12480 | Canola | cytosol | 30.7 | 21.74 |
| Bra016182.1-P | Field mustard | cytosol | 39.47 | 21.63 |
| Bra024564.1-P | Field mustard | cytosol | 34.21 | 21.43 |
| CDY21418 | Canola | cytosol | 34.21 | 21.43 |
| AT5G28000.1 | Thale cress | cytosol | 30.7 | 21.34 |
| KRH13946 | Soybean | cytosol | 28.95 | 21.29 |
| Bra016181.1-P | Field mustard | cytosol | 25.44 | 21.01 |
| CDX96283 | Canola | cytosol | 25.44 | 21.01 |
| CDY00801 | Canola | cytosol | 31.58 | 20.34 |
| CDY25771 | Canola | cytosol | 28.07 | 20.13 |
| Bra007945.1-P | Field mustard | cytosol | 40.35 | 20.09 |
| CDY03718 | Canola | cytosol | 40.35 | 20.09 |
| CDY09492 | Canola | cytosol | 40.35 | 20.09 |
| CDY11541 | Canola | cytosol | 27.19 | 20.0 |
| Bra012363.1-P | Field mustard | cytosol | 28.07 | 19.88 |
| CDY41463 | Canola | cytosol | 28.07 | 19.88 |
| Bra016362.1-P | Field mustard | cytosol | 28.07 | 19.88 |
| Bra016179.1-P | Field mustard | cytosol | 24.56 | 19.05 |
| CDY16542 | Canola | cytosol | 21.93 | 18.52 |
| CDX92456 | Canola | cytosol | 21.05 | 17.78 |
| Bra002309.1-P | Field mustard | cytosol | 21.05 | 17.78 |
| PGSC0003DMT400044158 | Potato | cytosol | 21.05 | 16.67 |
| PGSC0003DMT400020053 | Potato | cytosol | 42.98 | 16.55 |
| PGSC0003DMT400075928 | Potato | cytosol | 42.11 | 16.16 |
| Bra007949.1-P | Field mustard | cytosol | 32.46 | 14.68 |
| AT1G70850.1 | Thale cress | cytosol | 40.35 | 14.56 |
| CDY70076 | Canola | cytosol | 16.67 | 13.1 |
| AT1G70830.1 | Thale cress | cytosol | 37.72 | 12.84 |
| CDY68859 | Canola | cytosol | 14.91 | 11.72 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400041449 | EnsemblPlantsGene:PGSC0003DMG400016066 | Gene3D:3.30.530.20 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 |
| GO:GO:0009607 | InterPro:Bet_v_I/MLP | InterPro:IPR023393 | InterPro:START-like_dom_sf | PANTHER:PTHR31907 | PANTHER:PTHR31907:SF4 |
| PFAM:PF00407 | PGSC:PGSC0003DMG400016066 | SMART:SM01037 | SUPFAM:SSF55961 | UniParc:UPI000295A21B | UniProt:M1BBE4 |
| MapMan:35.1 | : | : | : | : | : |
Description
Major latex [Source:PGSC_GENE;Acc:PGSC0003DMG400016066]
Coordinates
chr00:-:25700999..25702445
Molecular Weight (calculated)
13088.8 Da
IEP (calculated)
9.190
GRAVY (calculated)
-0.493
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLKSVLCVK IEMKANKDVF HDVFTNKPHH VSTMSPLHVQ GFDLLEGDIG TVGSKICWTY TLDGEKKISK QILEAIDHEK KVLILREFEG DVTDKYDSFK
101: ATLHNRNKRR NRFG
101: ATLHNRNKRR NRFG
001: MADVATKHPM EDEVKKTEAS SLVGKLETDV EIKASADKFH HMFAGKPHHV SKASPGNIQG CDLHEGDWGT VGSIVFWNYV HDGEAKVAKE RIEAVEPDKN
101: LITFRVIEGD LMKEYKSFLL TIQVTPKPGG PGSIVHWHLE YEKISEEVAH PETLLQFCVE VSKEIDEHLL AEE
101: LITFRVIEGD LMKEYKSFLL TIQVTPKPGG PGSIVHWHLE YEKISEEVAH PETLLQFCVE VSKEIDEHLL AEE
Arabidopsis Description
MLP28MLP-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSK9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.