Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400030176 | |
| PGSC0003DMT400030222 | |
| PGSC0003DMT400055428 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G70830.1 | PGSC0003DMT400030176 | AT5G43080.1 | 20706207 |
| AT1G70830.1 | PGSC0003DMT400030222 | AT5G43080.1 | 20706207 |
| AT1G70830.1 | PGSC0003DMT400055428 | AT5G43080.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g081130.2.1 | Tomato | cytosol | 44.74 | 89.47 |
| PGSC0003DMT400021866 | Potato | cytosol | 82.89 | 82.89 |
| PGSC0003DMT400021868 | Potato | cytosol | 78.95 | 80.0 |
| PGSC0003DMT400021867 | Potato | cytosol | 78.95 | 78.95 |
| PGSC0003DMT400025429 | Potato | cytosol | 76.97 | 78.0 |
| PGSC0003DMT400041449 | Potato | cytosol | 56.58 | 75.44 |
| PGSC0003DMT400041446 | Potato | cytosol | 73.68 | 74.67 |
| PGSC0003DMT400025420 | Potato | cytosol | 73.68 | 74.17 |
| PGSC0003DMT400025419 | Potato | cytosol | 60.53 | 69.7 |
| PGSC0003DMT400031542 | Potato | cytosol | 63.82 | 63.4 |
| PGSC0003DMT400073916 | Potato | cytosol | 50.0 | 63.33 |
| PGSC0003DMT400073915 | Potato | cytosol | 62.5 | 62.09 |
| PGSC0003DMT400022721 | Potato | cytosol | 61.84 | 61.44 |
| PGSC0003DMT400056811 | Potato | cytosol | 39.47 | 46.51 |
| PGSC0003DMT400022679 | Potato | cytosol | 44.08 | 44.37 |
| PGSC0003DMT400041455 | Potato | cytosol | 44.08 | 44.37 |
| PGSC0003DMT400077743 | Potato | cytosol | 43.42 | 43.71 |
| VIT_01s0011g05170.t01 | Wine grape | cytosol | 17.11 | 40.62 |
| PGSC0003DMT400091938 | Potato | cytosol | 38.82 | 38.06 |
| VIT_01s0011g05190.t01 | Wine grape | cytosol | 37.5 | 37.75 |
| PGSC0003DMT400031386 | Potato | cytosol | 36.84 | 37.09 |
| VIT_01s0011g05150.t01 | Wine grape | cytosol | 32.89 | 36.23 |
| PGSC0003DMT400075925 | Potato | cytosol | 27.63 | 36.21 |
| VIT_01s0011g05180.t01 | Wine grape | cytosol | 35.53 | 35.76 |
| AT5G28010.2 | Thale cress | cytosol | 36.84 | 33.73 |
| AT1G70890.1 | Thale cress | cytosol | 34.87 | 33.54 |
| PGSC0003DMT400044158 | Potato | cytosol | 31.58 | 33.33 |
| KRH37979 | Soybean | cytosol | 33.55 | 32.9 |
| AT1G70860.2 | Thale cress | cytosol | 15.79 | 32.0 |
| KRH13947 | Soybean | cytosol | 32.24 | 31.61 |
| Bra007947.1-P | Field mustard | cytosol | 32.24 | 31.01 |
| KRH13946 | Soybean | cytosol | 31.58 | 30.97 |
| AT5G28000.1 | Thale cress | cytosol | 32.89 | 30.49 |
| AT1G70840.1 | Thale cress | cytosol | 34.21 | 30.41 |
| CDY09495 | Canola | cytosol | 31.58 | 30.38 |
| CDY12485 | Canola | cytosol | 19.74 | 30.3 |
| CDY12484 | Canola | cytosol | 31.58 | 30.0 |
| Bra012362.1-P | Field mustard | cytosol | 31.58 | 30.0 |
| Bra016364.1-P | Field mustard | cytosol | 30.92 | 29.94 |
| CDY41465 | Canola | cytosol | 30.92 | 29.94 |
| Bra016180.1-P | Field mustard | cytosol | 26.97 | 29.71 |
| CDX91696 | Canola | cytosol | 30.26 | 29.3 |
| CDY09499 | Canola | cytosol | 26.32 | 29.2 |
| CDX72752 | Canola | cytosol | 26.32 | 28.99 |
| AT1G70880.1 | Thale cress | cytosol | 30.26 | 28.93 |
| Bra012364.1-P | Field mustard | cytosol | 30.26 | 28.93 |
| CDY25772 | Canola | cytosol | 30.26 | 28.93 |
| PGSC0003DMT400059724 | Potato | cytosol | 40.79 | 28.7 |
| CDY65619 | Canola | cytosol | 30.92 | 28.66 |
| CDY03715 | Canola | cytosol | 30.92 | 28.66 |
| CDX89696 | Canola | cytosol | 28.29 | 28.48 |
| AT1G35310.1 | Thale cress | cytosol | 28.29 | 28.48 |
| CDY17433 | Canola | cytosol | 28.29 | 28.48 |
| Bra007946.1-P | Field mustard | cytosol | 25.66 | 28.47 |
| KRH13944 | Soybean | cytosol | 25.66 | 27.86 |
| AT1G35260.1 | Thale cress | cytosol | 27.63 | 27.63 |
| Bra003939.1-P | Field mustard | cytosol | 29.61 | 27.61 |
| CDX96283 | Canola | cytosol | 25.0 | 27.54 |
| Bra016181.1-P | Field mustard | cytosol | 25.0 | 27.54 |
| CDY23474 | Canola | cytosol | 28.95 | 26.99 |
| CDY21418 | Canola | cytosol | 32.24 | 26.92 |
| Bra024564.1-P | Field mustard | cytosol | 32.24 | 26.92 |
| CDX68328 | Canola | cytosol | 28.95 | 26.83 |
| CDY12480 | Canola | cytosol | 28.29 | 26.71 |
| CDX92456 | Canola | cytosol | 23.68 | 26.67 |
| CDY16542 | Canola | cytosol | 23.68 | 26.67 |
| CDY03713 | Canola | cytosol | 26.97 | 26.62 |
| Bra012361.1-P | Field mustard | cytosol | 24.34 | 26.62 |
| Bra016178.1-P | Field mustard | cytosol | 27.63 | 26.58 |
| Bra016179.1-P | Field mustard | cytosol | 25.66 | 26.53 |
| Bra016362.1-P | Field mustard | cytosol | 27.63 | 26.09 |
| CDY41463 | Canola | cytosol | 27.63 | 26.09 |
| AT1G23130.1 | Thale cress | cytosol | 26.97 | 25.62 |
| CDX72753 | Canola | cytosol | 26.32 | 25.32 |
| Bra002309.1-P | Field mustard | cytosol | 22.37 | 25.19 |
| CDY12482 | Canola | cytosol | 20.39 | 24.8 |
| CDY00801 | Canola | cytosol | 28.29 | 24.29 |
| Bra016182.1-P | Field mustard | cytosol | 32.89 | 24.04 |
| CDY25771 | Canola | cytosol | 24.34 | 23.27 |
| Bra012363.1-P | Field mustard | cytosol | 24.34 | 22.98 |
| CDY09492 | Canola | cytosol | 32.89 | 21.83 |
| Bra007945.1-P | Field mustard | cytosol | 32.89 | 21.83 |
| CDY03718 | Canola | cytosol | 32.89 | 21.83 |
| CDY70076 | Canola | cytosol | 20.39 | 21.38 |
| CDX96282 | Canola | cytosol | 17.11 | 21.31 |
| PGSC0003DMT400020053 | Potato | cytosol | 40.13 | 20.61 |
| PGSC0003DMT400075928 | Potato | cytosol | 39.47 | 20.2 |
| CDY68859 | Canola | cytosol | 19.08 | 20.0 |
| CDY11541 | Canola | cytosol | 17.11 | 16.77 |
| Bra007949.1-P | Field mustard | cytosol | 27.63 | 16.67 |
| AT1G70850.1 | Thale cress | cytosol | 33.55 | 16.14 |
| AT1G70830.1 | Thale cress | cytosol | 30.92 | 14.03 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400004549 | EnsemblPlantsGene:PGSC0003DMG400001807 | EntrezGene:102595460 | Gene3D:3.30.530.20 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | GO:GO:0009607 | InterPro:Bet_v_I/MLP | InterPro:IPR023393 | InterPro:START-like_dom_sf | PANTHER:PTHR31907 |
| PANTHER:PTHR31907:SF4 | PFAM:PF00407 | PGSC:PGSC0003DMG400001807 | RefSeq:XP_006354582.1 | SMART:SM01037 | SUPFAM:SSF55961 |
| UniParc:UPI000296C4C2 | UniProt:M0ZNM3 | MapMan:35.1 | : | : | : |
Description
Major latex [Source:PGSC_GENE;Acc:PGSC0003DMG400001807]
Coordinates
chr1:-:67618878..67620455
Molecular Weight (calculated)
17530.3 Da
IEP (calculated)
5.582
GRAVY (calculated)
-0.147
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLKSVLYAK IEMKANKDVF YDVFTNKPHL ISTMCPLHVQ GFELLDGVIG TVGSKICWMY TFEGKKKISK QIIETIDHEK KVLTFKEFEG DVVDIYDNFK
101: STLHIETKGE IDLISWTIEY ERPNENVPEL VNFLDFIVGI TKAVDDHHVK MN
101: STLHIETKGE IDLISWTIEY ERPNENVPEL VNFLDFIVGI TKAVDDHHVK MN
001: MAEKVEVTTM PKSSLLGKLE VEVEIKAPAA IFYHIYAGRP HHVAKATPRN VQSCDLHDGE WGTVGSIVYW NYVHEGQAKV AKERIELVEP EKKLIKFRVI
101: EGDVMAEYKS FLITIQVTPK EGGTGSVVKW HIEYEKIDEN VPHPENLLPF FAEMTKEIDE HLLSEE
101: EGDVMAEYKS FLITIQVTPK EGGTGSVVKW HIEYEKIDEN VPHPENLLPF FAEMTKEIDE HLLSEE
Arabidopsis Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K5S5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.