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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g078310.2.1
Solyc12g088470.1.1
Solyc12g088500.1.1
Solyc12g088520.1.1
Solyc12g088530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 Solyc04g078310.2.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088470.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088500.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088520.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088530.1.1 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400021866 Potato cytosol 92.11 92.11
Solyc09g014530.2.1 Tomato cytosol, extracellular 83.55 84.67
Solyc09g014550.2.1 Tomato cytosol 83.55 83.55
Solyc09g014560.1.1 Tomato cytosol 38.16 78.38
Solyc09g005410.1.1 Tomato cytosol 69.74 77.94
Solyc09g005400.2.1 Tomato cytosol 73.68 74.67
Solyc01g081130.2.1 Tomato cytosol 36.18 72.37
Solyc09g005420.2.1 Tomato cytosol 71.05 72.0
Solyc07g008710.2.1 Tomato cytosol, extracellular, nucleus 70.39 67.3
Solyc09g014540.1.1 Tomato cytosol 40.79 61.39
Solyc09g005500.2.1 Tomato extracellular 46.71 47.02
Solyc05g046160.1.1 Tomato cytosol 18.42 43.75
VIT_01s0011g05170.t01 Wine grape cytosol 17.76 42.19
Solyc04g007830.2.1 Tomato cytosol 36.84 41.79
Solyc05g046150.2.1 Tomato cytosol, extracellular 40.13 40.67
Solyc05g046140.2.1 Tomato endoplasmic reticulum, extracellular 40.13 40.67
VIT_01s0011g05190.t01 Wine grape cytosol 40.13 40.4
Solyc05g046220.1.1 Tomato cytosol 24.34 38.54
VIT_01s0011g05150.t01 Wine grape cytosol 34.21 37.68
AT1G70890.1 Thale cress cytosol 38.82 37.34
VIT_01s0011g05180.t01 Wine grape cytosol 36.18 36.42
AT5G28010.2 Thale cress cytosol 37.5 34.34
KRH13947 Soybean cytosol 34.21 33.55
CDY09495 Canola cytosol 34.87 33.54
CDY65619 Canola cytosol 36.18 33.54
CDY03715 Canola cytosol 36.18 33.54
AT1G70840.1 Thale cress cytosol 37.5 33.33
AT1G70860.2 Thale cress cytosol 16.45 33.33
Bra012362.1-P Field mustard cytosol 34.21 32.5
Bra016364.1-P Field mustard cytosol 33.55 32.48
CDY41465 Canola cytosol 33.55 32.48
CDX89696 Canola cytosol 32.24 32.45
CDY12485 Canola cytosol 21.05 32.32
AT1G35260.1 Thale cress cytosol 32.24 32.24
Bra007946.1-P Field mustard cytosol 28.95 32.12
CDY25772 Canola cytosol 33.55 32.08
AT1G70880.1 Thale cress cytosol 33.55 32.08
Bra012364.1-P Field mustard cytosol 33.55 32.08
Bra003939.1-P Field mustard cytosol 34.21 31.9
CDY12484 Canola cytosol 33.55 31.88
CDX91696 Canola cytosol 32.89 31.85
CDY03713 Canola cytosol 32.24 31.82
CDY17433 Canola cytosol 31.58 31.79
AT5G28000.1 Thale cress cytosol 34.21 31.71
CDY12480 Canola cytosol 33.55 31.68
Bra007947.1-P Field mustard cytosol 32.89 31.65
KRH37979 Soybean cytosol 32.24 31.61
CDY23474 Canola cytosol 33.55 31.29
AT1G35310.1 Thale cress cytosol 30.92 31.13
CDX68328 Canola cytosol 33.55 31.1
AT1G23130.1 Thale cress cytosol 32.24 30.62
Bra016180.1-P Field mustard cytosol 27.63 30.43
CDY41463 Canola cytosol 32.24 30.43
Bra016362.1-P Field mustard cytosol 32.24 30.43
CDY16542 Canola cytosol 26.97 30.37
Bra012361.1-P Field mustard cytosol 27.63 30.22
CDY09499 Canola cytosol 26.97 29.93
CDX72752 Canola cytosol 26.97 29.71
KRH13946 Soybean cytosol 30.26 29.68
Bra024564.1-P Field mustard cytosol 34.87 29.12
CDY21418 Canola cytosol 34.87 29.12
CDX96283 Canola cytosol 26.32 28.99
Bra016181.1-P Field mustard cytosol 26.32 28.99
Bra016182.1-P Field mustard cytosol 38.82 28.37
CDY00801 Canola cytosol 32.89 28.25
Bra002309.1-P Field mustard cytosol 25.0 28.15
CDX92456 Canola cytosol 25.0 28.15
Bra016179.1-P Field mustard cytosol 26.97 27.89
KRH13944 Soybean cytosol 25.66 27.86
Bra016178.1-P Field mustard cytosol 28.29 27.22
CDX72753 Canola cytosol 27.63 26.58
CDX96282 Canola cytosol 21.05 26.23
CDY12482 Canola cytosol 21.05 25.6
Bra007945.1-P Field mustard cytosol 38.16 25.33
CDY09492 Canola cytosol 38.16 25.33
CDY03718 Canola cytosol 38.16 25.33
CDY25771 Canola cytosol 25.0 23.9
Bra012363.1-P Field mustard cytosol 25.0 23.6
CDY70076 Canola cytosol 20.39 21.38
CDY11541 Canola cytosol 21.05 20.65
CDY68859 Canola cytosol 19.08 20.0
Bra007949.1-P Field mustard cytosol 30.92 18.65
AT1G70850.1 Thale cress cytosol 37.5 18.04
AT1G70830.1 Thale cress cytosol 35.53 16.12
Protein Annotations
EnsemblPlants:Solyc09g014580.2.1EnsemblPlantsGene:Solyc09g014580.2Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31907PANTHER:PTHR31907:SF4
PFAM:PF00407SMART:SM01037SUPFAM:SSF55961UniParc:UPI000276B91DUniProt:K4CRT4MapMan:35.1
Description
No Description!
Coordinates
chr9:-:6221354..6222253
Molecular Weight (calculated)
17424.1 Da
IEP (calculated)
5.872
GRAVY (calculated)
-0.248
Length
152 amino acids
Sequence
(BLAST)
001: MSLKSVLCAK IEMKANKDVF HDVFTNKPHH VSTICPLHVQ GCELLEGVFG TVGSKICWRY TLGGKEKISR QVIECIDEEK KVITFKEFEG DLVNTYDNWK
101: ATLHIETKGE VDLVSWTMEY ERPNENVPEL INLLDFIIGM TKAVDDHHVK MN
Best Arabidopsis Sequence Match ( AT5G28010.1 )
(BLAST)
001: MAEKVEVTTM PKSSLLGKLE VEVEIKAPAA IFYHIYAGRP HHVAKATPRN VQSCDLHDGE WGTVGSIVYW NYVHEGQAKV AKERIELVEP EKKLIKFRVI
101: EGDVMAEYKS FLITIQVTPK EGGTGSVVKW HIEYEKIDEN VPHPENLLPF FAEMTKEIDE HLLSEE
Arabidopsis Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K5S5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.