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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 3
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:secretory
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g078310.2.1
Solyc12g088470.1.1
Solyc12g088500.1.1
Solyc12g088520.1.1
Solyc12g088530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G70830.1 Solyc04g078310.2.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088470.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088500.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088520.1.1 AT5G43080.1 20706207
AT1G70830.1 Solyc12g088530.1.1 AT5G43080.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g081130.2.1 Tomato cytosol 43.24 42.11
VIT_01s0011g05170.t01 Wine grape cytosol 35.14 40.62
Solyc09g005410.1.1 Tomato cytosol 72.97 39.71
PGSC0003DMT400025420 Potato cytosol 78.38 38.41
Solyc09g014580.2.1 Tomato cytosol 78.38 38.16
Solyc09g014530.2.1 Tomato cytosol, extracellular 75.68 37.33
Solyc09g014550.2.1 Tomato cytosol 75.68 36.84
Solyc09g005420.2.1 Tomato cytosol 72.97 36.0
Solyc09g005400.2.1 Tomato cytosol 70.27 34.67
Solyc07g008710.2.1 Tomato cytosol, extracellular, nucleus 62.16 28.93
AT1G70860.2 Thale cress cytosol 28.38 28.0
CDX96282 Canola cytosol 35.14 21.31
Solyc09g005500.2.1 Tomato extracellular 41.89 20.53
VIT_01s0011g05190.t01 Wine grape cytosol 39.19 19.21
CDY11541 Canola cytosol 36.49 17.42
Solyc05g046140.2.1 Tomato endoplasmic reticulum, extracellular 35.14 17.33
VIT_01s0011g05180.t01 Wine grape cytosol 35.14 17.22
Bra002309.1-P Field mustard cytosol 31.08 17.04
CDY16542 Canola cytosol 31.08 17.04
AT1G70890.1 Thale cress cytosol 35.14 16.46
CDX92456 Canola cytosol 29.73 16.3
AT1G23130.1 Thale cress cytosol 35.14 16.25
Solyc05g046150.2.1 Tomato cytosol, extracellular 32.43 16.0
VIT_01s0011g05150.t01 Wine grape cytosol 29.73 15.94
CDY65619 Canola cytosol 35.14 15.85
CDY03715 Canola cytosol 35.14 15.85
CDY09495 Canola cytosol 33.78 15.82
Bra007947.1-P Field mustard cytosol 33.78 15.82
AT1G70840.1 Thale cress cytosol 36.49 15.79
Solyc04g007830.2.1 Tomato cytosol 28.38 15.67
CDY03713 Canola cytosol 32.43 15.58
CDY23474 Canola cytosol 33.78 15.34
CDY25772 Canola cytosol 32.43 15.09
Bra012364.1-P Field mustard cytosol 32.43 15.09
Bra003939.1-P Field mustard cytosol 32.43 14.72
Bra016364.1-P Field mustard cytosol 31.08 14.65
CDY41465 Canola cytosol 31.08 14.65
CDX91696 Canola cytosol 31.08 14.65
CDX68328 Canola cytosol 32.43 14.63
KRH13944 Soybean cytosol 27.03 14.29
KRH13947 Soybean cytosol 29.73 14.19
Bra016178.1-P Field mustard cytosol 29.73 13.92
CDX89696 Canola cytosol 28.38 13.91
CDY17433 Canola cytosol 28.38 13.91
AT5G28010.2 Thale cress cytosol 31.08 13.86
AT1G70880.1 Thale cress cytosol 29.73 13.84
Bra012362.1-P Field mustard cytosol 29.73 13.75
Bra012361.1-P Field mustard cytosol 25.68 13.67
CDY12480 Canola cytosol 29.73 13.66
CDX72753 Canola cytosol 28.38 13.29
AT1G35310.1 Thale cress cytosol 27.03 13.24
CDY12484 Canola cytosol 28.38 13.12
CDY41463 Canola cytosol 28.38 13.04
Bra016362.1-P Field mustard cytosol 28.38 13.04
KRH13946 Soybean cytosol 27.03 12.9
CDY12482 Canola cytosol 21.62 12.8
Bra016182.1-P Field mustard cytosol 35.14 12.5
KRH37979 Soybean cytosol 25.68 12.26
Bra016179.1-P Field mustard cytosol 24.32 12.24
Bra007945.1-P Field mustard cytosol 37.84 12.23
CDY09492 Canola cytosol 37.84 12.23
CDY03718 Canola cytosol 37.84 12.23
AT5G28000.1 Thale cress cytosol 27.03 12.2
Bra024564.1-P Field mustard cytosol 29.73 12.09
CDY21418 Canola cytosol 29.73 12.09
AT1G35260.1 Thale cress cytosol 24.32 11.84
CDY09499 Canola cytosol 21.62 11.68
CDY25771 Canola cytosol 24.32 11.32
Bra012363.1-P Field mustard cytosol 24.32 11.18
Bra016180.1-P Field mustard cytosol 20.27 10.87
CDY00801 Canola cytosol 25.68 10.73
Bra007946.1-P Field mustard cytosol 18.92 10.22
CDX72752 Canola cytosol 18.92 10.14
CDX96283 Canola cytosol 18.92 10.14
Bra016181.1-P Field mustard cytosol 18.92 10.14
CDY12485 Canola cytosol 13.51 10.1
AT1G70850.1 Thale cress cytosol 35.14 8.23
Bra007949.1-P Field mustard cytosol 27.03 7.94
AT1G70830.1 Thale cress cytosol 35.14 7.76
Solyc09g014540.1.1 Tomato cytosol 9.46 6.93
CDY68859 Canola cytosol 12.16 6.21
CDY70076 Canola cytosol 12.16 6.21
Solyc05g046220.1.1 Tomato cytosol 4.05 3.12
Solyc05g046160.1.1 Tomato cytosol 2.7 3.12
Protein Annotations
EnsemblPlants:Solyc09g014560.1.1EnsemblPlantsGene:Solyc09g014560.1Gene3D:3.30.530.20GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31907PANTHER:PTHR31907:SF4
PFAM:PF00407SUPFAM:SSF55961UniParc:UPI000276B91CUniProt:K4CRT3MapMan:35.2:
Description
No Description!
Coordinates
chr9:-:6195377..6197648
Molecular Weight (calculated)
8311.2 Da
IEP (calculated)
8.674
GRAVY (calculated)
-0.176
Length
74 amino acids
Sequence
(BLAST)
1: MGLKSVLCAK IEMNANKNVF HDVFKNKPHH VFTMCPLHVQ GCQLLEGTFG MVGSKICWTY TLGRRGKEDL EASN
Best Arabidopsis Sequence Match ( AT1G70830.5 )
(BLAST)
001: MADVATKHPM EDEVKKTEAS SLVGKLETDV EIKASADKFH HMFAGKPHHV SKASPGNIQG CDLHEGDWGT VGSIVFWNYV HDGEAKVAKE RIEAVEPDKN
101: LITFRVIEGD LMKEYKSFLL TIQVTPKPGG PGSIVHWHLE YEKISEEVAH PETLLQFCVE VSKEIDEHLL AEE
Arabidopsis Description
MLP28MLP-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSK9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.