Factsheet for Solyc12g088470.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007740.2.1
Solyc01g081640.2.1
Solyc01g089970.2.1
Solyc01g097050.2.1
Solyc01g103050.2.1
Solyc01g111080.2.1
Solyc01g111170.2.1
Solyc02g063070.2.1
Solyc02g067460.2.1
Solyc02g081170.2.1
Solyc02g093900.2.1
Solyc03g031460.1.1
Solyc03g034180.2.1
Solyc03g058920.2.1
Solyc03g082600.2.1
Solyc03g110910.2.1
Solyc04g073990.2.1
Solyc04g074230.2.1
Solyc04g081580.2.1
Solyc05g053650.2.1
Solyc05g055730.2.1
Solyc06g066060.2.1
Solyc07g052350.2.1
Solyc07g056490.2.1
Solyc08g022210.2.1
Solyc08g061000.2.1
Solyc08g066330.1.1
Solyc09g055420.1.1
Solyc09g091750.2.1
Solyc09g091780.2.1	nucleus
Solyc10g054910.1.1
Solyc10g082030.1.1
Solyc11g008870.1.1
Solyc12g005860.1.1
Solyc12g011310.1.1
Solyc12g098310.1.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47220.1	Solyc05g053650.2.1	AT1G04810.1	20706207
AT1G47220.1	Solyc09g091750.2.1	AT1G04810.1	20706207
AT1G47220.1	Solyc04g074230.2.1	AT1G22300.1	20706207
AT1G47220.1	Solyc04g073990.2.1	AT1G35720.1	20706207
AT1G47220.1	Solyc01g103050.2.1	AT1G59750.1	20706207
AT1G47220.1	Solyc01g111080.2.1	AT1G75750.1	20706207
AT1G47220.1	Solyc07g056490.2.1	AT1G78380.1	20706207
AT1G47220.1	Solyc12g011310.1.1	AT1G78380.1	20706207
AT1G47220.1	Solyc07g052350.2.1	AT2G05710.1	20706207
AT1G47220.1	Solyc12g005860.1.1	AT2G05710.1	20706207
AT1G47220.1	Solyc05g055730.2.1	AT2G44160.1	20706207
AT1G47220.1	Solyc11g008870.1.1	AT2G44160.1	20706207
AT1G47220.1	Solyc02g067460.2.1	AT3G01280.1	20706207
AT1G47220.1	Solyc03g058920.2.1	AT3G01280.1	20706207
AT1G47220.1	Solyc01g007740.2.1	AT3G11630.1	20706207
AT1G47220.1	Solyc10g082030.1.1	AT3G11630.1	20706207
AT1G47220.1	Solyc02g093900.2.1	AT3G27240.1	20706207
AT1G47220.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT1G47220.1	Solyc01g089970.2.1	AT4G09320.1	20706207
AT1G47220.1	Solyc09g055420.1.1	AT4G09320.1	20706207
AT1G47220.1	Solyc01g111170.2.1	AT4G38740.1	20706207
AT1G47220.1	Solyc10g054910.1.1	AT4G38740.1	20706207
AT1G47220.1	Solyc06g066060.2.1	AT5G11170.1	20706207
AT1G47220.1	Solyc08g061000.2.1	AT5G11170.1	20706207
AT1G47220.1	Solyc02g063070.2.1	AT5G38480.1	20706207
AT1G47220.1	Solyc03g034180.2.1	AT5G38480.1	20706207
AT1G47220.1	Solyc03g082600.2.1	AT5G53560.1	20706207
AT5G43080.1	Solyc03g031460.1.1	AT1G55890.1	20706207
AT5G43080.1	Solyc08g022210.2.1	AT2G05830.1	20706207
AT5G43080.1	Solyc01g081640.2.1	AT2G31920.1	20706207
AT5G43080.1	Solyc09g091780.2.1	AT2G32710.1	20018602
AT5G43080.1	Solyc12g098310.1.1	AT2G32710.1	20018602
AT5G43080.1	Solyc01g097050.2.1	AT3G04620.1	20706207
AT5G43080.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT5G43080.1	Solyc02g081170.2.1	AT4G04020.1	20706207
AT5G43080.1	Solyc04g081580.2.1	AT4G16630.1	20706207
AT5G43080.1	Solyc03g110910.2.1	AT5G50320.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088500.1.1	Tomato	nucleus	91.67	93.22
PGSC0003DMT400030222	Potato	nucleus	91.39	92.94
Solyc12g088520.1.1	Tomato	nucleus	86.67	87.89
Solyc12g088530.1.1	Tomato	nucleus	78.61	79.94
Solyc04g078310.2.1	Tomato	nucleus	72.78	70.62
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	67.22	66.3
KRH52056	Soybean	nucleus	37.22	63.51
OQU91386	Sorghum	nucleus	43.89	60.54
CDY06752	Canola	nucleus	46.39	58.6
CDY22369	Canola	nucleus	56.39	57.83
GSMUA_Achr10P...	Banana	nucleus	50.83	57.73
Bra033658.1-P	Field mustard	nucleus	56.11	56.74
KRH15427	Soybean	nucleus, plastid	56.94	56.32
TraesCS4D01G076900.1	Wheat	nucleus	57.22	55.68
HORVU4Hr1G013320.1	Barley	nucleus	56.94	54.96
AT5G43080.1	Thale cress	nucleus	54.17	54.93
KRH05614	Soybean	nucleus	55.83	54.77
TraesCS4B01G078300.1	Wheat	nucleus	56.39	54.72
GSMUA_Achr2P21530_001	Banana	cytosol, nucleus, plastid	43.33	54.55
KRH61375	Soybean	nucleus	49.44	54.43
CDY66770	Canola	nucleus	54.44	54.14
TraesCS4A01G236700.2	Wheat	plastid	56.39	54.13
CDY17091	Canola	nucleus	53.33	53.63
AT1G47230.2	Thale cress	nucleus, plastid	54.72	53.24
KRH61369	Soybean	nucleus	48.33	53.21
CDY06757	Canola	nucleus, plastid	53.61	53.17
Bra040753.1-P	Field mustard	nucleus, plastid	53.61	53.17
KRH61371	Soybean	nucleus	51.39	53.01
GSMUA_Achr6P11130_001	Banana	nucleus	57.5	52.94
KRH52055	Soybean	nucleus	52.5	52.79
AT1G47210.2	Thale cress	nucleus	54.44	52.69
CDY47596	Canola	nucleus	53.06	52.62
Bra040793.1-P	Field mustard	nucleus	52.78	52.34
CDY17039	Canola	nucleus	52.5	52.07
CDY17037	Canola	nucleus, plastid	52.22	51.65
Bra032220.1-P	Field mustard	nucleus	51.11	51.54
Bra040710.1-P	Field mustard	nucleus	53.06	51.48
Bra040792.1-P	Field mustard	nucleus, plastid	51.94	51.37
CDY23653	Canola	nucleus	50.83	51.26
CDY47595	Canola	nucleus, plastid	52.5	50.94
KRH61373	Soybean	nucleus, plastid	52.5	50.4
Zm00001d033365_P002	Maize	nucleus	51.39	49.73
Solyc10g049360.1.1	Tomato	nucleus	51.94	49.47
Zm00001d013744_P001	Maize	nucleus	48.89	49.3
GSMUA_Achr2P21520_001	Banana	nucleus	48.89	48.89
Os12t0581800-01	Rice	nucleus, plastid	52.22	48.83
TraesCS5B01G078200.1	Wheat	plastid	50.56	48.28
AT1G47220.1	Thale cress	nucleus	43.61	48.01
TraesCS5D01G084700.1	Wheat	nucleus	50.28	47.88
TraesCS5A01G072000.1	Wheat	plastid	50.0	47.87
Zm00001d030849_P001	Maize	nucleus	54.72	46.57
EES16237	Sorghum	nucleus, plastid	55.0	46.26
TraesCS4D01G253200.1	Wheat	nucleus	30.83	45.49
Zm00001d041334_P001	Maize	nucleus, plastid	52.22	43.02
TraesCS4B01G254000.1	Wheat	nucleus	43.61	41.76
TraesCS4D01G253900.1	Wheat	nucleus	43.06	40.79
TraesCS4A01G050700.1	Wheat	nucleus	42.5	40.26
HORVU5Hr1G018820.2	Barley	nucleus, plastid	50.56	40.09
EER95303	Sorghum	nucleus, plastid	41.39	39.11
TraesCS4A01G051300.1	Wheat	nucleus	36.39	38.19
TraesCS4B01G253100.1	Wheat	nucleus	36.11	38.12
HORVU4Hr1G069310.3	Barley	nucleus	43.33	37.59
Solyc06g065680.2.1	Tomato	nucleus, plastid	43.06	32.63
Solyc03g120440.1.1	Tomato	nucleus, plastid	40.56	31.88
Solyc11g005090.1.1	Tomato	plastid	42.78	31.43
Zm00001d048127_P001	Maize	plastid	39.17	29.44
Os03t0607600-00	Rice	nucleus	49.44	29.28
Solyc02g061650.1.1	Tomato	nucleus	28.33	29.06
Os03t0208700-00	Rice	nucleus	32.78	28.85
Solyc04g082430.2.1	Tomato	nucleus	28.06	25.7
Solyc03g032190.2.1	Tomato	nucleus	30.56	25.52
Solyc02g082820.2.1	Tomato	nucleus	29.44	24.42
Solyc12g094600.1.1	Tomato	nucleus	28.61	24.24
Solyc01g009040.2.1	Tomato	nucleus	28.89	23.91
Solyc10g078330.1.1	Tomato	nucleus	28.06	23.88
Solyc06g073610.2.1	Tomato	nucleus	29.17	23.86
Solyc10g080950.1.1	Tomato	nucleus	27.5	21.43
Os03t0208800-00	Rice	nucleus	17.22	15.62
Solyc07g066660.2.1	Tomato	nucleus	25.0	12.18

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	InterPro:Cyclin-A_plant	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:K4DGR8
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF270
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc12g088470.1	EnsemblPlants:Solyc12g088470.1.1	UniParc:UPI000276AB57

Description

No Description!

Coordinates

chr12:+:63830453..63832183

Molecular Weight (calculated)

41726.8 Da

IEP (calculated)

7.919

GRAVY (calculated)

-0.278

Length

360 amino acids

Sequence
(BLAST)

001: MEQQTMADQE NFVRVTRLAK KRAAEAMVQQ LQQPNKKRVV LTEIQDLCNV GINQIEDKVF VSEPLRPKCK HIIKRKLKIS DDDPQMCTAY VSDIYDYLHQ
101: MEIEKKRRPL PDYLENVQKD VSANMRGVLV DWLVEVTDEY KLLSDTLYLA VSYIDRFLSV NVIPRKKLQL LGVSSMLIAA KYEEINPPDV GEFCYITDNS
201: YSKKEMVKME ADVLKCLKFE MGNPTIKTFL GQFNKIAQED YKKNNLQVEF LGYYLAELSL LDYNCVKFLP SLVAAAVIFL SRFTLQPMSH PWSMALQRCS
301: GYRPVDLKEC VLIIHDLQLS RRGSTLEAVR DKYKLHKFKC VSTLSSPLEI PDSFFEDTRQ

Best Arabidopsis Sequence Match ( AT5G43080.1 )
(BLAST)

001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI

Arabidopsis Description

CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.