Factsheet for Solyc07g052350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074489	Potato	cytosol, extracellular	98.79	98.6
Solyc12g005860.1.1	Tomato	extracellular, plastid	86.93	88.18
KRH26786	Soybean	mitochondrion	85.03	85.98
KRH22567	Soybean	mitochondrion	84.92	85.87
KRH56130	Soybean	mitochondrion	84.42	85.8
KRH25376	Soybean	mitochondrion	84.32	85.26
VIT_12s0059g02150.t01	Wine grape	plastid	84.42	85.11
CDY18054	Canola	plastid	83.22	83.98
CDX97969	Canola	plastid	83.32	83.65
AT2G05710.1	Thale cress	plastid	83.12	83.54
CDY50945	Canola	plastid	83.52	83.52
CDX93088	Canola	plastid	83.42	83.5
Bra019845.1-P	Field mustard	plastid	82.91	83.25
KRH15702	Soybean	mitochondrion	16.58	82.5
CDY56501	Canola	plastid	77.69	79.44
Bra015165.1-P	Field mustard	plastid	67.44	66.04
Solyc09g090900.2.1	Tomato	plastid	12.06	23.76
Solyc03g005730.2.1	Tomato	plastid	11.66	22.79

Protein Annotations

KEGG:00020+4.2.1.3	KEGG:00290+4.2.1.33	KEGG:00630+4.2.1.3	KEGG:00720+4.2.1.3	Gene3D:1.10.1440.20	MapMan:2.3.2
Gene3D:3.20.19.10	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:5.7.3.6.2	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba
InterPro:Aconitase/3IPM_dehydase_swvl	InterPro:Aconitase/IRP2	InterPro:AconitaseA/IPMdHydase_ssu_swvl	InterPro:Aconitase_4Fe-4S_BS	InterPro:Aconitase_4Fe-4S_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0003994	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016829
GO:GO:0051536	GO:GO:0051539	InterPro:IPR015928	InterPro:IPR015931	UniProt:K4CFD4	PFAM:PF00330
PFAM:PF00694	PRINTS:PR00415	ScanProsite:PS00450	ScanProsite:PS01244	PANTHER:PTHR11670	PANTHER:PTHR11670:SF50
SUPFAM:SSF52016	SUPFAM:SSF53732	EnsemblPlantsGene:Solyc07g052350.2	EnsemblPlants:Solyc07g052350.2.1	TIGRFAMs:TIGR01341	UniParc:UPI000276B81B
SEG:seg	:	:	:	:	:

Description

Aconitate hydratase [Source:UniProtKB/TrEMBL;Acc:K4CFD4]

Coordinates

chr7:+:60857014..60865452

Molecular Weight (calculated)

108207.0 Da

IEP (calculated)

7.600

GRAVY (calculated)

-0.178

Length

995 amino acids

Sequence
(BLAST)

001: MYSNTARKYS SSAASSLLRA SSSVTRPLAS TSTAAHAPCR AGAASGNQQR YSSTLRSLRC SVPRWSHGVD WKSPISLTAQ IRTAAPALNG FHRKLATMAA
101: ENPFKGILTG LPKPGGGEFG KFYSLPALND PRIDKLPYSI RILLESAIRN CDNFQVKKED VEKIIDWENS APKLVEIPFK PARVLLQDFT GVPAVVDLAC
201: MRDAMNNLGS DSDKINPLVP VDLVIDHSVQ VDVTRSENAV QANMELEFQR NKERFAFLKW GSNAFQNMLV VPPGSGIVHQ VNLEYLGRVV FNREGLLYPD
301: SVVGTDSHTT MIDGLGVAGW GVGGIEAEAA MLGQPMSMVL PGVVGFKLSG NLRNGVTATD LVLTVTQMLR KHGVVGKFVE FYGEGMSGLS LADRATIANM
401: APEYGATMGF FPVDHVTLQY LKLTGRSDET VGMVESYLRA NNMFVDYKEP QQEKVYSSYL NLDLADVEPC LSGPKRPHDR VPLKEMKSDW HACLDNKVGF
501: KGFAVPKEVQ DKVAKFSFHG QPAELKHGSV VIAAITSCTN TSNPSVMLGA ALVAKKASEL GLHVKPWVKT SLAPGSGVVT KYLLKSGLQK YLNQQGFNIV
601: GYGCTTCIGN SGDLDESVAS AISENDIVAA AVLSGNRNFE GRVHALTRAN YLASPPLVVA YALAGTVDID FEKDPIGVGK DGKDVYFRDI WPSTEEIAEV
701: VQSSVLPDMF KSTYEAITKG NTMWNELSVP TTKLYQWDPK STYIHEPPYF KGMTMDPPGP HGVKDAYCLL NFGDSITTDH ISPAGSIHKD SPAARYLMER
801: GVDRRDFNSY GSRRGNDEIM ARGTFANIRL VNKLLNGEVG PKTVHIPSGE KLSVFDAAMK YKSAGQSTII LAGAEYGSGS SRDWAAKGPM LLGVKAVIAK
901: SFERIHRSNL VGMGIVPLCF KAGEDADTLG LTGQERYTID LPENISEIRP GQDVTVQTDT GKSFTCVVRF DTEVELAYFN HGGILQYVIR QLTKQ

Best Arabidopsis Sequence Match ( AT2G05710.1 )
(BLAST)

001: MYLTASSSAS SSIIRAASSR SSSLFSFRSV LSPSVSSTSP SSLLARRSFG TISPAFRRWS HSFHSKPSPF RFTSQIRAVS PVLDRLQRTF SSMASEHPFK
101: GIFTTLPKPG GGEFGKFYSL PALNDPRVDK LPYSIRILLE SAIRNCDNFQ VTKEDVEKII DWEKTSPKQV EIPFKPARVL LQDFTGVPAV VDLACMRDAM
201: NKLGSDSNKI NPLVPVDLVI DHSVQVDVAR SENAVQANME LEFQRNKERF AFLKWGSTAF QNMLVVPPGS GIVHQVNLEY LGRVVFNTKG LLYPDSVVGT
301: DSHTTMIDGL GVAGWGVGGI EAEATMLGQP MSMVLPGVVG FKLAGKMRNG VTATDLVLTV TQMLRKHGVV GKFVEFYGNG MSGLSLADRA TIANMSPEYG
401: ATMGFFPVDH VTLQYLKLTG RSDETVAMIE AYLRANNMFV DYNEPQQDRV YSSYLELNLD DVEPCISGPK RPHDRVTLKE MKADWHSCLD SKVGFKGFAI
501: PKEAQEKVVN FSFDGQPAEL KHGSVVIAAI TSCTNTSNPS VMLGAGLVAK KACDLGLQVK PWIKTSLAPG SGVVTKYLLK SGLQEYLNEQ GFNIVGYGCT
601: TCIGNSGEIN ESVGAAITEN DIVAAAVLSG NRNFEGRVHP LTRANYLASP PLVVAYALAG TVNIDFETEP IGKGKNGKDV FLRDIWPTTE EIAEVVQSSV
701: LPDMFRATYE SITKGNPMWN KLSVPENTLY SWDPNSTYIH EPPYFKDMTM DPPGPHNVKD AYCLLNFGDS ITTDHISPAG NIQKDSPAAK FLMERGVDRK
801: DFNSYGSRRG NDEIMARGTF ANIRIVNKLM NGEVGPKTVH IPSGEKLSVF DAAMRYKSSG EDTIILAGAE YGSGSSRDWA AKGPMLQGVK AVIAKSFERI
901: HRSNLVGMGI IPLCFKSGED ADTLGLTGHE RYTIHLPTDI SEIRPGQDVT VTTDNGKSFT CTVRFDTEVE LAYFNHGGIL PYVIRNLSKQ

Arabidopsis Description

ACO3Aconitate hydratase 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SIB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.