CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 8
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56130	Soybean	mitochondrion	95.43	95.91
KRH26786	Soybean	mitochondrion	90.04	90.04
KRH22567	Soybean	mitochondrion	90.04	90.04
KRH74952	Soybean	cytosol	8.13	86.02
KRH28848	Soybean	cytosol, nucleus	78.35	85.57
KRH76600	Soybean	endoplasmic reticulum	78.15	85.35
VIT_12s0059g02150.t01	Wine grape	plastid	85.47	85.21
Solyc07g052350.2.1	Tomato	plastid	85.26	84.32
PGSC0003DMT400022547	Potato	mitochondrion, plastid	83.94	84.2
AT2G05710.1	Thale cress	plastid	84.35	83.84
PGSC0003DMT400074489	Potato	cytosol, extracellular	84.86	83.75
Solyc12g005860.1.1	Tomato	extracellular, plastid	83.44	83.69
CDX97969	Canola	plastid	84.25	83.65
KRH15702	Soybean	mitochondrion	16.97	83.5
CDX93088	Canola	plastid	84.25	83.4
CDY50945	Canola	plastid	84.25	83.32
Bra019845.1-P	Field mustard	plastid	83.84	83.25
CDY18054	Canola	plastid	83.33	83.16
CDY56501	Canola	plastid	78.66	79.55
KRH30182	Soybean	cytosol	6.81	71.28
KRH26402	Soybean	cytosol, endoplasmic reticulum, plasma membrane	15.55	71.16
Bra015165.1-P	Field mustard	plastid	67.48	65.35
KRG94138	Soybean	cytosol	4.98	59.76
KRG89642	Soybean	cytosol	4.88	58.54
KRH66899	Soybean	cytosol	4.78	39.83
KRG92248	Soybean	plastid	12.3	23.96
KRH17398	Soybean	nucleus	11.59	22.8
KRH06959	Soybean	cytosol, mitochondrion, peroxisome, plastid	7.32	17.1
KRH54854	Soybean	cytosol	2.34	16.31
KRH05916	Soybean	plastid	11.79	12.1

Protein Annotations

KEGG:00020+4.2.1.3	KEGG:00290+4.2.1.33	KEGG:00630+4.2.1.3	KEGG:00720+4.2.1.3	Gene3D:1.10.1440.20	EntrezGene:100778506
MapMan:2.3.2	Gene3D:3.20.19.10	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:5.7.3.6.2	EMBL:ACUP02007247
InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase/3IPM_dehydase_swvl	InterPro:Aconitase/IRP2	InterPro:AconitaseA/IPMdHydase_ssu_swvl	InterPro:Aconitase_4Fe-4S_BS
InterPro:Aconitase_4Fe-4S_dom	EnsemblPlantsGene:GLYMA_12G098900	GO:GO:0003674	GO:GO:0003824	GO:GO:0003994	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016829	GO:GO:0051536	GO:GO:0051539	UniProt:I1LRQ4
InterPro:IPR015928	InterPro:IPR015931	EnsemblPlants:KRH25376	ProteinID:KRH25376	ProteinID:KRH25376.1	PFAM:PF00330
PFAM:PF00694	PRINTS:PR00415	ScanProsite:PS00450	ScanProsite:PS01244	PANTHER:PTHR11670	PANTHER:PTHR11670:SF50
SUPFAM:SSF52016	SUPFAM:SSF53732	TIGRFAMs:TIGR01341	UniParc:UPI000233C42E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:+:8565455..8574745

Molecular Weight (calculated)

107639.0 Da

IEP (calculated)

6.952

GRAVY (calculated)

-0.175

Length

984 amino acids

Sequence
(BLAST)

001: MYITTASSSA SSLLRATRPK LFFPSPSRNF ASFTPCTSSF SATARSLLCS VPRWSHRLHS ASPLTPRPRI SAVAPLVERF HREIATMANE NPFKGNLTSL
101: PKPGGGEFGK FYSLPSLNDP RIDRLPYSIR ILLESAIRNC DNFQVKKEDV EKILDWENNS TKQVEIPFKP ARVLLQDFTG VPAVVDLACM RDAMNKLGSD
201: SNKINPLVPV DLVIDHSVQV DVTRSDNAVQ ANMELEFQRN KERFAFLKWG STAFRNMLVV PPGSGIVHQV NLEYLGRVVF NNEGLLYPDS VVGTDSHTTM
301: IDGLGVAGWG VGGIEAEAAM LGQPLSMVLP GVVGFKLSGK LRNGVTATDL VLTVTQILRK HGVVGKFVEF YGDGMGELSL ADRATIANMS PEYGATMGFF
401: PVDHVTLQYL KLTGRSDEIV AMIESYLREN KLFVDYNEPQ QDRVYSSYLE LNLSDVEPCI SGPKRPHDRV PLKEMKADWH ACLDNKVGFK GFAIPKEAQG
501: KVAKFDFHGQ PAELKHGSVV IAAITSCTNT SNPSVMLGAG LVAKKAHELG LQVNPWVKTS LAPGSGVVTK YLLQSGLQKY LNEQGFHIVG FGCTTCIGNS
601: GELEESVASA ISENDIVAAA VLSGNRNFEG RVHALTRANY LASPPLVVAY ALAGTVDIDF EKEPIGTGKD GKNVYLRDIW PSTEEIAKVV QSSVLPEMFR
701: STYEAITKGN PMWNQLQVPA DTLYSWDPDS TYIHEPPYFK SMTMDPPGPH GVKDAYCLLN FGDSITTDHI SPAGSIHKDS PAAKYLVEHG VERKDFNSYG
801: SRRGNDEVMA RGTFANIRLV NKLLNGEVGP KTIHIPTGEK LYVFDAATRY KASGQDTIVL AGAEYGSGSS RDWAAKGPML LGVKAVIAKS FERIHRSNLV
901: GMGIIPLCFK PGEDADTLGL TGHERYTIEL PSIINEIRPG QDVTVTTDNG KSFTCTARFD TEVELAYFNH GGILPYVIRN LIKQ

Best Arabidopsis Sequence Match ( AT2G05710.1 )
(BLAST)

001: MYLTASSSAS SSIIRAASSR SSSLFSFRSV LSPSVSSTSP SSLLARRSFG TISPAFRRWS HSFHSKPSPF RFTSQIRAVS PVLDRLQRTF SSMASEHPFK
101: GIFTTLPKPG GGEFGKFYSL PALNDPRVDK LPYSIRILLE SAIRNCDNFQ VTKEDVEKII DWEKTSPKQV EIPFKPARVL LQDFTGVPAV VDLACMRDAM
201: NKLGSDSNKI NPLVPVDLVI DHSVQVDVAR SENAVQANME LEFQRNKERF AFLKWGSTAF QNMLVVPPGS GIVHQVNLEY LGRVVFNTKG LLYPDSVVGT
301: DSHTTMIDGL GVAGWGVGGI EAEATMLGQP MSMVLPGVVG FKLAGKMRNG VTATDLVLTV TQMLRKHGVV GKFVEFYGNG MSGLSLADRA TIANMSPEYG
401: ATMGFFPVDH VTLQYLKLTG RSDETVAMIE AYLRANNMFV DYNEPQQDRV YSSYLELNLD DVEPCISGPK RPHDRVTLKE MKADWHSCLD SKVGFKGFAI
501: PKEAQEKVVN FSFDGQPAEL KHGSVVIAAI TSCTNTSNPS VMLGAGLVAK KACDLGLQVK PWIKTSLAPG SGVVTKYLLK SGLQEYLNEQ GFNIVGYGCT
601: TCIGNSGEIN ESVGAAITEN DIVAAAVLSG NRNFEGRVHP LTRANYLASP PLVVAYALAG TVNIDFETEP IGKGKNGKDV FLRDIWPTTE EIAEVVQSSV
701: LPDMFRATYE SITKGNPMWN KLSVPENTLY SWDPNSTYIH EPPYFKDMTM DPPGPHNVKD AYCLLNFGDS ITTDHISPAG NIQKDSPAAK FLMERGVDRK
801: DFNSYGSRRG NDEIMARGTF ANIRIVNKLM NGEVGPKTVH IPSGEKLSVF DAAMRYKSSG EDTIILAGAE YGSGSSRDWA AKGPMLQGVK AVIAKSFERI
901: HRSNLVGMGI IPLCFKSGED ADTLGLTGHE RYTIHLPTDI SEIRPGQDVT VTTDNGKSFT CTVRFDTEVE LAYFNHGGIL PYVIRNLSKQ

Arabidopsis Description

ACO3Aconitate hydratase 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SIB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.