CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92248	Soybean	plastid	38.95	32.48
KRH17398	Soybean	nucleus	34.92	29.4
KRH05916	Soybean	plastid	34.68	15.22
KRH74952	Soybean	cytosol	3.33	15.05
KRH26402	Soybean	cytosol, endoplasmic reticulum, plasma membrane	7.13	13.95
KRH15702	Soybean	mitochondrion	5.94	12.5
KRH66899	Soybean	cytosol	3.33	11.86
KRH54854	Soybean	cytosol	3.56	10.64
KRH30182	Soybean	cytosol	2.14	9.57
KRH76600	Soybean	endoplasmic reticulum	17.34	8.1
KRH28848	Soybean	cytosol, nucleus	17.34	8.1
KRH56130	Soybean	mitochondrion	17.1	7.35
KRH26786	Soybean	mitochondrion	17.1	7.32
KRH25376	Soybean	mitochondrion	17.1	7.32
KRH22567	Soybean	mitochondrion	17.1	7.32
KRG94138	Soybean	cytosol	0.95	4.88
KRG89642	Soybean	cytosol	0.95	4.88
AT5G54950.1	Thale cress	cytosol	0.24	1.35

Protein Annotations

EMBL:ACUP02009903	EnsemblPlants:KRH06959	EnsemblPlantsGene:GLYMA_16G057900	Gene3D:3.30.499.20	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	KEGG:00290+4.2.1.33
PANTHER:PTHR36712	PFAM:PF00330	ProteinID:KRH06959	ProteinID:KRH06959.1	SUPFAM:SSF53732	TMHMM:TMhelix
UniParc:UPI000295F251	UniProt:K7MFD6	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:5667039..5670946

Molecular Weight (calculated)

47888.9 Da

IEP (calculated)

8.279

GRAVY (calculated)

-0.133

Length

421 amino acids

Sequence
(BLAST)

001: MRIYDEFKEI VKIQKFRRLV SYSGFYCFAT LISYFYVNNT TRAGFSRADQ FYASYPAGTE LLTDTTKLYK AALGNCFEAE EWGPFEFCVM AKHFERQGKS
101: PYAYHAKMFR NTPKVWDCEK LMFIPDHYIF PNAEHAHYIV DISRKFCVEQ DIKYFYAIQD CSNFRANPDC KGTGKVLLKV PPALRFVLEG EMPCYLLAKG
201: LILHINGEIS MSGASYKGMK FVGTTIENLS MEERMAVCNM VVEAVGKNSI VVTTYKYLGD MTLAPYEPVF SDENARFLVQ YRFNASKMEP LVTKPHSSAN
301: LALLVAQLSK FLCFSFLLHK RVWMVIHLKT QLKGKFYTPR QGILHPRKHG ISLSSPTCDH IFNQHSVEFA VGADNPESAI CASLATGLLE TRKSDQILEQ
401: ISEGQQYMAH LLSHGQLDGS G

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.