CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28848	Soybean	cytosol, nucleus	98.56	98.56
KRH74952	Soybean	cytosol	9.21	89.25
Bra010508.1-P	Field mustard	cytosol	87.68	87.97
AT4G35830.1	Thale cress	cytosol	87.68	87.97
VIT_00s0264g00030.t01	Wine grape	mitochondrion	89.35	87.69
CDX69174	Canola	cytosol	87.68	87.68
Bra011642.1-P	Field mustard	cytosol	87.35	87.64
CDY41626	Canola	cytosol	87.46	87.07
CDY24823	Canola	cytosol	87.57	85.57
CDX75532	Canola	cytosol	87.24	84.97
TraesCS4B01G335100.1	Wheat	endoplasmic reticulum	73.25	82.6
KRH15702	Soybean	mitochondrion	18.2	82.0
CDX91508	Canola	cytosol	7.33	80.49
HORVU4Hr1G080640.1	Barley	mitochondrion	82.69	80.45
GSMUA_Achr11P...	Banana	plastid	87.13	79.61
KRH25376	Soybean	mitochondrion	85.35	78.15
KRH56130	Soybean	mitochondrion	84.91	78.14
KRH26786	Soybean	mitochondrion	85.24	78.05
KRH22567	Soybean	mitochondrion	85.02	77.85
Os03t0136900-01	Rice	mitochondrion	84.13	76.88
Zm00001d048358_P002	Maize	plastid	83.02	75.63
EER92899	Sorghum	plastid	83.13	75.58
TraesCS5A01G505000.2	Wheat	golgi	82.69	74.87
KRH30182	Soybean	cytosol	7.77	74.47
CDY44621	Canola	cytosol	8.1	73.74
GSMUA_Achr11P...	Banana	plastid	81.69	73.53
Zm00001d027558_P003	Maize	plastid	83.02	73.05
KRH26402	Soybean	cytosol, endoplasmic reticulum, plasma membrane	15.21	63.72
KRG94138	Soybean	cytosol	5.33	58.54
KRG89642	Soybean	cytosol	5.22	57.32
KRH66899	Soybean	cytosol	5.22	39.83
KRH17398	Soybean	nucleus	12.43	22.4
KRG92248	Soybean	plastid	12.54	22.38
KRH06959	Soybean	cytosol, mitochondrion, peroxisome, plastid	8.1	17.34
KRH54854	Soybean	cytosol	2.66	17.02
KRH05916	Soybean	plastid	12.65	11.89

Protein Annotations

KEGG:00020+4.2.1.3	KEGG:00290+4.2.1.33	KEGG:00630+4.2.1.3	KEGG:00720+4.2.1.3	Gene3D:1.10.1440.20	EntrezGene:100499625
MapMan:2.3.2	Gene3D:3.20.19.10	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:5.7.3.6.2	EMBL:ACUP02000629
InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase/3IPM_dehydase_swvl	InterPro:Aconitase/IRP2	InterPro:AconitaseA/IPMdHydase_ssu_swvl	InterPro:Aconitase_4Fe-4S_BS
InterPro:Aconitase_4Fe-4S_dom	EnsemblPlantsGene:GLYMA_01G162800	GO:GO:0003674	GO:GO:0003824	GO:GO:0003994	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016829	GO:GO:0051536	GO:GO:0051539	UniProt:I1J8H1
InterPro:IPR015928	InterPro:IPR015931	EnsemblPlants:KRH76600	ProteinID:KRH76600	ProteinID:KRH76600.1	PFAM:PF00330
PFAM:PF00694	PRINTS:PR00415	ScanProsite:PS00450	ScanProsite:PS01244	PANTHER:PTHR11670	PANTHER:PTHR11670:SF52
SUPFAM:SSF52016	SUPFAM:SSF53732	TIGRFAMs:TIGR01341	UniParc:UPI0002337B10	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:50061858..50069855

Molecular Weight (calculated)

98527.7 Da

IEP (calculated)

5.647

GRAVY (calculated)

-0.132

Length

901 amino acids

Sequence
(BLAST)

001: MATENPFNSI LRTLEKPGGA GEFGKYFSLP ALNDPRIDRL PYSVRILLES AIRNCDEFQV KSNDIEKIID WENTSPKLVE IPFKPARVLL QDFTGVPAVV
101: DLACMRDAMN KLGGDSNKIN PLVPVDLVID HSVQVDVARS ENAVQANMEL EFQRNKERFG FLKWGSNAFN NMLVVPPGSG IVHQVNLEYL GRVVFNTNGV
201: LYPDSVVGTD SHTTMIDGLG VAGWGVGGIE AEAAMLGQPM SMVLPGVVGF KLLGKLRDGV TATDLVLTVT QMLRKHGVVG KFVEFYGEGM SELSLADRAT
301: IANMSPEYGA TMGFFPVDHV TLQYLRLTGR SDETVSMIES YLRANKMFVD YSEPQVERVY SSYLELNLED VEPCVSGPKR PHDRVPLREM KVDWHACLNN
401: KVGFKGFAVS KESQNKVAEF TFQGTPAHLR HGDVVIAAIT SCTNTSNPSV MLGAALVAKK ACELGLQVKP WIKTSLAPGS GVVTKYLQRS GLQKYLNELG
501: FNIVGYGCTT CIGNSGDINE AVASAITEND IVAAAVLSGN RNFEGRVHPL TRANYLASPP LVVAYALAGT VDIDFDTEPI GIGKDGTEIF FKDIWPSSEE
601: IANVVQSSVL PDMFRDTYNA ITQGNPMWNN LSVPTGTLYA WDPTSTYIHE PPYFRDMSMS PPGSHGVKDA YCLLNFGDSI TTDHISPAGS IHKDSPAARY
701: LIERGVDRRD FNSYGSRRGN DEVMARGTFA NIRIVNKFLN GEVGPKTIHI PSGEKLSVFD VAEKYKSEGH DMIILAGAEY GSGSSRDWAA KGPMLLGVKA
801: VIAKSFERIH RSNLVGMGII PLCFKPGEDA DSLGLTGQER YTIDLPSNVN EIRPGQDVTV VTDTGKSFVS TLRFDTEVEL AYFNHGGILQ YVIRNLINAK
901: H

Best Arabidopsis Sequence Match ( AT4G35830.1 )
(BLAST)

001: MASENPFRSI LKALEKPDGG EFGNYYSLPA LNDPRIDKLP YSIRILLESA IRNCDEFQVK SKDVEKILDW ENTSPKQVEI PFKPARVLLQ DFTGVPAVVD
101: LACMRDAMNN LGGDSNKINP LVPVDLVIDH SVQVDVARSE NAVQANMELE FQRNKERFAF LKWGSNAFHN MLVVPPGSGI VHQVNLEYLA RVVFNTNGLL
201: YPDSVVGTDS HTTMIDGLGV AGWGVGGIEA EATMLGQPMS MVLPGVVGFK LTGKLRDGMT ATDLVLTVTQ MLRKHGVVGK FVEFHGEGMR ELSLADRATI
301: ANMSPEYGAT MGFFPVDHVT LQYLRLTGRS DDTVSMIEAY LRANKMFVDY SEPESKTVYS SCLELNLEDV EPCVSGPKRP HDRVPLKEMK ADWHSCLDNR
401: VGFKGFAVPK EAQSKAVEFN FNGTTAQLRH GDVVIAAITS CTNTSNPSVM LGAALVAKKA CDLGLEVKPW IKTSLAPGSG VVTKYLAKSG LQKYLNQLGF
501: SIVGYGCTTC IGNSGDIHEA VASAIVDNDL VASAVLSGNR NFEGRVHPLT RANYLASPPL VVAYALAGTV DIDFETQPIG TGKDGKQIFF RDIWPSNKEV
601: AEVVQSSVLP DMFKATYEAI TKGNSMWNQL SVASGTLYEW DPKSTYIHEP PYFKGMTMSP PGPHGVKDAY CLLNFGDSIT TDHISPAGSI HKDSPAAKYL
701: MERGVDRRDF NSYGSRRGND EIMARGTFAN IRIVNKHLKG EVGPKTVHIP TGEKLSVFDA AMKYRNEGRD TIILAGAEYG SGSSRDWAAK GPMLLGVKAV
801: ISKSFERIHR SNLVGMGIIP LCFKAGEDAE TLGLTGQELY TIELPNNVSE IKPGQDVTVV TNNGKSFTCT LRFDTEVELA YFDHGGILQY VIRNLIKQ

Arabidopsis Description

ACO1Aconitate hydratase [Source:UniProtKB/TrEMBL;Acc:A0A178V2T4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.