CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06213	Sorghum	plastid	85.2	84.02
GSMUA_Achr2P20910_001	Banana	plastid	73.0	83.72
Zm00001d015088_P002	Maize	plastid	83.8	82.97
Zm00001d053960_P003	Maize	plastid	82.6	81.78
Os02t0125100-01	Rice	plastid	83.6	81.32
TraesCS2B01G181900.1	Wheat	plastid	81.2	81.04
TraesCS6B01G108100.2	Wheat	plastid	82.0	81.03
TraesCS6D01G074300.1	Wheat	plastid	82.6	80.98
Bra040341.1-P	Field mustard	plastid	81.6	80.95
CDY56070	Canola	plastid	81.6	80.79
TraesCS6A01G080600.1	Wheat	plastid	82.4	80.78
CDY43713	Canola	plastid	81.4	80.75
AT4G13430.1	Thale cress	plastid	81.0	79.57
CDY47367	Canola	plastid	81.0	79.57
CDY01130	Canola	plastid	80.8	79.53
Bra032708.1-P	Field mustard	plastid	80.6	79.02
HORVU6Hr1G013950.5	Barley	plastid	81.8	76.88
GSMUA_Achr10P...	Banana	cytosol	35.8	76.17
KRG92248	Soybean	plastid	76.4	75.64
Zm00001d053941_P001	Maize	cytosol	49.8	70.34
CDX87247	Canola	cytosol	17.6	61.97
Zm00001d053950_P001	Maize	cytosol	25.4	54.04
KRH05916	Soybean	plastid	98.2	51.2
KRH06959	Soybean	cytosol, mitochondrion, peroxisome, plastid	29.4	34.92
KRH54854	Soybean	cytosol	8.8	31.21
KRH74952	Soybean	cytosol	5.0	26.88
KRG94138	Soybean	cytosol	3.6	21.95
KRG89642	Soybean	cytosol	3.6	21.95
KRH66899	Soybean	cytosol	4.8	20.34
KRH15702	Soybean	mitochondrion	8.0	20.0
KRH26402	Soybean	cytosol, endoplasmic reticulum, plasma membrane	8.0	18.6
KRH30182	Soybean	cytosol	2.6	13.83
KRH76600	Soybean	endoplasmic reticulum	22.4	12.43
KRH28848	Soybean	cytosol, nucleus	22.4	12.43
KRH56130	Soybean	mitochondrion	23.0	11.75
KRH25376	Soybean	mitochondrion	22.8	11.59
KRH26786	Soybean	mitochondrion	22.2	11.28
KRH22567	Soybean	mitochondrion	22.2	11.28

Protein Annotations

KEGG:00290+4.2.1.33	EntrezGene:100787098	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1	MapMan:9.5.1.3.1
UniProt:A0A0R0GG96	EMBL:ACUP02009087	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	EnsemblPlantsGene:GLYMA_14G217300
GO:GO:0003674	GO:GO:0003824	GO:GO:0003861	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016836	GO:GO:0051539	InterPro:Homoacnase/IPMdehydase_lsu
InterPro:IPMI_cat	InterPro:IPR015931	EnsemblPlants:KRH17398	ProteinID:KRH17398	ProteinID:KRH17398.1	PFAM:PF00330
PRINTS:PR00415	PANTHER:PTHR43822	PANTHER:PTHR43822:SF2	SUPFAM:SSF53732	TIGRFAMs:TIGR01343	UniParc:UPI0001890C3B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:48215760..48224085

Molecular Weight (calculated)

54669.6 Da

IEP (calculated)

7.106

GRAVY (calculated)

-0.163

Length

500 amino acids

Sequence
(BLAST)

001: MASSLLSPSF TSFLRTKDLS LSAFTSQRCF KAVPRKIIRC AIAAPQRQPS TTGSVRTAMT MTEKILARAS EKAQLTPGDN VWVNVDILMT HDVCGPGSIG
101: IFKREFGEDA KVWDREKLVI IPDHYIFTSD ERANRNVDIL RDFCHEQNIK YFYDIKDLSN FKVNPDYKGV CHVALAQEGH CRPGEVLLGT DSHTCTAGAF
201: GQFATGIGNT DAGFVLGTGK LLLKVPPTLR FVMDGEMPDY LLSKDLILQI IGEITVAGAT YKSMEFVGTT VESLTMEERM TLCNMVVEAG GKNGVVPADS
301: TTFKYLEGKT SLPYEPVYSD DQARFLAEYR FDVSKLEPVV AKPHSPDNRA LARECKDVKI DRVYIGSCTG GKTEDFMAAA KVFLASGKQV KVPTFLVPAT
401: QKVWMDLYSL PVPGSGGKTC SQIFEEVGCD TPASPSCGAC LGGPKDTYAR MNEPKVCVST TNRNFPGRMG HKEGQIYLAS PYTAAASALT GYVTDPREFL

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.