Factsheet for TraesCS6B01G108100.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G074300.1	Wheat	plastid	98.81	98.04
TraesCS6A01G080600.1	Wheat	plastid	98.62	97.84
HORVU6Hr1G013950.5	Barley	plastid	97.23	92.48
TraesCS2B01G181900.1	Wheat	plastid	90.91	91.82
Zm00001d015088_P002	Maize	plastid	91.3	91.49
EES06213	Sorghum	plastid	91.3	91.12
Os02t0125100-01	Rice	plastid	91.9	90.47
Zm00001d053960_P003	Maize	plastid	89.13	89.31
GSMUA_Achr2P20910_001	Banana	plastid	73.12	84.86
KRH17398	Soybean	nucleus	81.03	82.0
PGSC0003DMT400003947	Potato	cytosol	30.24	81.38
PGSC0003DMT400003942	Potato	cytosol	30.24	81.38
Solyc03g005730.2.1	Tomato	plastid	80.63	80.16
PGSC0003DMT400035003	Potato	cytosol, plastid	80.63	80.16
VIT_05s0049g01980.t01	Wine grape	plastid	80.43	80.12
VIT_08s0056g01640.t01	Wine grape	plastid	81.42	80.0
Bra040341.1-P	Field mustard	plastid	76.88	77.18
CDY43713	Canola	plastid	76.68	76.98
CDY56070	Canola	plastid	76.68	76.83
CDY01130	Canola	plastid	76.48	76.18
GSMUA_Achr10P...	Banana	cytosol	35.38	76.17
AT4G13430.1	Thale cress	plastid	76.48	76.03
Bra032708.1-P	Field mustard	plastid	76.48	75.88
Solyc09g090900.2.1	Tomato	plastid	75.69	75.84
CDY47367	Canola	plastid	76.28	75.83
KRG92248	Soybean	plastid	73.72	73.86
Zm00001d053941_P001	Maize	cytosol	51.38	73.45
CDX87247	Canola	cytosol	16.4	58.45
Zm00001d053950_P001	Maize	cytosol	25.69	55.32
KRH05916	Soybean	plastid	81.23	42.86
TraesCS4B01G335100.1	Wheat	endoplasmic reticulum	19.96	12.64
TraesCS6B01G440200.1	Wheat	plastid	22.92	11.87
TraesCS3B01G213900.1	Wheat	plastid	21.54	10.86
TraesCS3B01G213800.1	Wheat	cytosol	13.64	10.52

Protein Annotations

KEGG:00290+4.2.1.33	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1	MapMan:9.5.1.3.1	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3
InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0003861	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016836
GO:GO:0051539	InterPro:Homoacnase/IPMdehydase_lsu	InterPro:IPMI_cat	InterPro:IPR015931	PFAM:PF00330	PRINTS:PR00415
PANTHER:PTHR43822	SUPFAM:SSF53732	TIGRFAMs:TIGR01343	EnsemblPlantsGene:TraesCS6B01G108100	EnsemblPlants:TraesCS6B01G108100.2	TIGR:cd01583
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:88711465..88716428

Molecular Weight (calculated)

54841.3 Da

IEP (calculated)

6.699

GRAVY (calculated)

-0.219

Length

506 amino acids

Sequence
(BLAST)

001: MASISAAAKA TSAAFAHKKE LAAAVPPQQL ARSRRARAGR VRAVATPTRA PRSPASTGSV KSPMTTTEKI LARASERASL EPGENVWVDV DVLMTHDVCG
101: PGTIGIFKQE FGEDAKVWDR EKVVIIPDHY IFTSDERANR NVDILRDFCE EQKIKYFYDI KDLSDFRANP DYKGVCHIAL AQEGHCRPGE VLLGTDSHTC
201: NAGAFGQFAT GIGNTDAGFV MGTGKALLKV PPTIRFILDG EMPPYLLAKD LILQIIGEIS VSGATYRSME FVGSTIESLT MEERMTLCNM VIEAGGKNGV
301: VPADETTFKY LEGKTSVEYE PVYSDAQARF YSDYRFDVSK LEPVVAKPHS PDNRALAREC KDVKIDRVYI GSCTGGKTED FIAAAKVFLA SGQKVKVPTF
401: LVPATQKVWM DVYSLPVPGS GGKTCSQIFE EAGCDTPASP NCGACLGGPR DTYARMNEPT VCVSTTNRNF PGRMGHKEGQ IYLASPFTAA ASALTGYVTD
501: PRDFLS

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.