CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053950_P001	Maize	cytosol	45.77	27.66
GSMUA_Achr2P20910_001	Banana	plastid	58.45	19.04
Zm00001d053941_P001	Maize	cytosol	46.48	18.64
AT4G13430.1	Thale cress	plastid	66.2	18.47
CDY43713	Canola	plastid	64.08	18.06
CDY01130	Canola	plastid	64.08	17.91
CDY56070	Canola	plastid	63.38	17.82
CDY47367	Canola	plastid	63.38	17.68
KRH17398	Soybean	nucleus	61.97	17.6
Os02t0125100-01	Rice	plastid	61.97	17.12
EES06213	Sorghum	plastid	60.56	16.96
VIT_05s0049g01980.t01	Wine grape	plastid	60.56	16.93
VIT_08s0056g01640.t01	Wine grape	plastid	61.27	16.89
Zm00001d015088_P002	Maize	plastid	59.86	16.83
PGSC0003DMT400035003	Potato	cytosol, plastid	59.86	16.7
Solyc03g005730.2.1	Tomato	plastid	59.86	16.7
Solyc09g090900.2.1	Tomato	plastid	58.45	16.44
Zm00001d053960_P003	Maize	plastid	58.45	16.44
TraesCS6B01G108100.2	Wheat	plastid	58.45	16.4
TraesCS6D01G074300.1	Wheat	plastid	58.45	16.27
TraesCS6A01G080600.1	Wheat	plastid	58.45	16.27
KRG92248	Soybean	plastid	56.34	15.84
HORVU6Hr1G013950.5	Barley	plastid	59.15	15.79
TraesCS2B01G181900.1	Wheat	plastid	55.63	15.77
KRH05916	Soybean	plastid	62.68	9.28
CDX91508	Canola	cytosol	2.11	3.66
CDY44621	Canola	cytosol	2.11	3.03
CDX69174	Canola	cytosol	16.9	2.66
CDX75532	Canola	cytosol	16.2	2.49
CDY19879	Canola	mitochondrion	1.41	2.33
CDX97969	Canola	plastid	16.2	2.32
CDY41626	Canola	cytosol	14.79	2.32
CDX93088	Canola	plastid	16.2	2.31
CDY66424	Canola	mitochondrion	16.2	2.31
CDY14291	Canola	mitochondrion, plastid	16.2	2.31
CDY50945	Canola	plastid	16.2	2.31
CDY24823	Canola	cytosol	14.79	2.28
CDY18054	Canola	plastid	15.49	2.23
PGSC0003DMT400003947	Potato	cytosol	2.82	2.13
PGSC0003DMT400003942	Potato	cytosol	2.82	2.13
CDY56501	Canola	plastid	13.38	1.95
GSMUA_Achr10P...	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX87247	EnsemblPlantsGene:GSBRNA2T00146187001	Gene3D:3.30.499.20	GO:A0A078DDW1	GO:GO:0008150	GO:GO:0008152
InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	KEGG:00290+4.2.1.33	PANTHER:PTHR43822	PFAM:PF00330	ProteinID:CDX87247
ProteinID:CDX87247.1	SUPFAM:SSF53732	UniParc:UPI0004EE908B	UniPathway:UPA00048	MapMan:35.1	:

Description

BnaC09g05620D

Coordinates

chrLK031849:-:1401216..1402770

Molecular Weight (calculated)

15764.7 Da

IEP (calculated)

6.092

GRAVY (calculated)

-0.213

Length

142 amino acids

Sequence
(BLAST)

001: MGASEALTDP SSLYDVGNVE FSDTYTMLTV RNALASVQNR EFGDKAKVWD SEKIVVIPYH YIFTADKRAN RNVDIMRDYC REQNIVVIKA NPDYKGVCHV
101: ALAQEGHCRP GEVLLRTDSH ACTAGAFGQF AKGLETLMQA LC

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.