Factsheet for TraesCS2B01G181900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G108100.2	Wheat	plastid	91.82	90.91
Zm00001d015088_P002	Maize	plastid	88.62	87.92
EES06213	Sorghum	plastid	88.62	87.57
HORVU6Hr1G013950.5	Barley	plastid	92.22	86.84
Os02t0125100-01	Rice	plastid	88.82	86.58
Zm00001d053960_P003	Maize	plastid	86.83	86.14
GSMUA_Achr2P20910_001	Banana	plastid	73.05	83.94
PGSC0003DMT400003942	Potato	cytosol	31.14	82.98
PGSC0003DMT400003947	Potato	cytosol	31.14	82.98
KRH17398	Soybean	nucleus	81.04	81.2
Solyc03g005730.2.1	Tomato	plastid	80.04	78.78
PGSC0003DMT400035003	Potato	cytosol, plastid	79.84	78.59
VIT_08s0056g01640.t01	Wine grape	plastid	80.64	78.45
VIT_05s0049g01980.t01	Wine grape	plastid	79.24	78.15
GSMUA_Achr10P...	Banana	cytosol	35.93	76.6
Solyc09g090900.2.1	Tomato	plastid	76.05	75.45
Bra040341.1-P	Field mustard	plastid	75.85	75.4
CDY56070	Canola	plastid	75.85	75.25
CDY43713	Canola	plastid	75.65	75.2
AT4G13430.1	Thale cress	plastid	76.05	74.85
CDY01130	Canola	plastid	75.85	74.8
Bra032708.1-P	Field mustard	plastid	75.85	74.51
CDY47367	Canola	plastid	75.65	74.46
KRG92248	Soybean	plastid	74.25	73.66
Zm00001d053941_P001	Maize	cytosol	51.3	72.6
CDX87247	Canola	cytosol	15.77	55.63
Zm00001d053950_P001	Maize	cytosol	25.35	54.04
KRH05916	Soybean	plastid	81.04	42.34
TraesCS4B01G335100.1	Wheat	endoplasmic reticulum	20.36	12.77
TraesCS6B01G440200.1	Wheat	plastid	23.35	11.98
TraesCS3B01G213900.1	Wheat	plastid	21.76	10.86
TraesCS3B01G213800.1	Wheat	cytosol	14.17	10.82

Protein Annotations

KEGG:00290+4.2.1.33	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1	MapMan:9.5.1.3.1	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3
InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0003861
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987
GO:GO:0016836	GO:GO:0051539	InterPro:Homoacnase/IPMdehydase_lsu	InterPro:IPMI_cat	InterPro:IPR015931	PFAM:PF00330
PRINTS:PR00415	PANTHER:PTHR43822	SUPFAM:SSF53732	TIGRFAMs:TIGR01343	EnsemblPlantsGene:TraesCS2B01G181900	EnsemblPlants:TraesCS2B01G181900.1
TIGR:cd01583	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:156914704..156922970

Molecular Weight (calculated)

54796.5 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.203

Length

501 amino acids

Sequence
(BLAST)

001: MNYSCIIREA SMRMINPFVM VSRLDFWSRR TRAGRVHAVA TSTGLPRAPA STGSVKSPMT TTEKILARKS ERASLEPGEN VWVDVDVLMT HDVCGPGTIG
101: IFKQEFGEDA KVWDREKVVI IPDHYIFTGD ERANRNVDIL RDFCAEQKIK YFYDIKDLSD FRANPDYKGV CHIALAQEGH CRPGEVLLGT DSHTCNAGAF
201: GQFATGIGNT DAGFVMGTGK ALLKVPPTIR FVLDGEMPPY LLAKDLILQI IGEISVSGAT YKSMEFAGST IESLNMEERM TLCNMVIEAG GKNGVVPADE
301: TTFKYLEGKT SVEYEPVYSD AQARFYSDYR FDVSKLEPVV AKPHSPDNRA LARECKDVKI DRVYIGSCTG GKTEDFIAAA KVFLASGKKV KVPTFLVPAT
401: QKVWMDVYSL PVPGSGGKTC SQIFEEAGCD APASPNCGAC LGGPRDTYAR MNEPTVCVST TNRNFPGRMG HKEGQIYLAS PYTAAASALT GYVTDPRDFL
501: L

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.