CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040341.1-P	Field mustard	plastid	99.41	99.6
CDY43713	Canola	plastid	99.21	99.4
CDY47367	Canola	plastid	96.83	96.07
CDY01130	Canola	plastid	96.04	95.47
AT4G13430.1	Thale cress	plastid	94.85	94.11
PGSC0003DMT400035003	Potato	cytosol, plastid	83.37	82.71
Solyc03g005730.2.1	Tomato	plastid	82.97	82.32
KRH17398	Soybean	nucleus	80.79	81.6
PGSC0003DMT400003947	Potato	cytosol	30.1	80.85
PGSC0003DMT400003942	Potato	cytosol	30.1	80.85
VIT_08s0056g01640.t01	Wine grape	plastid	82.38	80.78
GSMUA_Achr2P20910_001	Banana	plastid	69.7	80.73
VIT_05s0049g01980.t01	Wine grape	plastid	80.99	80.51
Zm00001d015088_P002	Maize	plastid	78.22	78.22
EES06213	Sorghum	plastid	78.02	77.71
Zm00001d053960_P003	Maize	plastid	77.62	77.62
TraesCS6B01G108100.2	Wheat	plastid	76.83	76.68
KRG92248	Soybean	plastid	76.63	76.63
TraesCS6D01G074300.1	Wheat	plastid	76.83	76.08
Solyc09g090900.2.1	Tomato	plastid	76.04	76.04
TraesCS6A01G080600.1	Wheat	plastid	76.63	75.88
TraesCS2B01G181900.1	Wheat	plastid	75.25	75.85
Os02t0125100-01	Rice	plastid	76.83	75.49
HORVU6Hr1G013950.5	Barley	plastid	76.63	72.74
GSMUA_Achr10P...	Banana	cytosol	33.07	71.06
Zm00001d053941_P001	Maize	cytosol	45.35	64.69
CDX87247	Canola	cytosol	17.82	63.38
Zm00001d053950_P001	Maize	cytosol	23.37	50.21
KRH05916	Soybean	plastid	80.79	42.54
CDX69174	Canola	cytosol	21.19	11.88
CDY41626	Canola	cytosol	20.99	11.71
CDY24823	Canola	cytosol	20.99	11.5
CDX75532	Canola	cytosol	20.99	11.46
CDY18054	Canola	plastid	21.98	11.26
CDY14291	Canola	mitochondrion, plastid	22.18	11.26
CDY66424	Canola	mitochondrion	22.18	11.26
CDY56501	Canola	plastid	21.58	11.2
CDX91508	Canola	cytosol	1.78	10.98
CDX97969	Canola	plastid	21.39	10.9
CDX93088	Canola	plastid	21.39	10.87
CDY50945	Canola	plastid	21.39	10.85
CDY44621	Canola	cytosol	1.78	9.09
CDY19879	Canola	mitochondrion	0.4	2.33

Protein Annotations

KEGG:00290+4.2.1.33	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1	MapMan:9.5.1.3.1	GO:A0A078IWJ5
UniProt:A0A078IWJ5	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	EnsemblPlants:CDY56070	ProteinID:CDY56070
ProteinID:CDY56070.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003861	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016836	GO:GO:0051539
EnsemblPlantsGene:GSBRNA2T00017738001	InterPro:Homoacnase/IPMdehydase_lsu	InterPro:IPMI_cat	InterPro:IPR015931	PFAM:PF00330	PRINTS:PR00415
PANTHER:PTHR43822	SUPFAM:SSF53732	TIGRFAMs:TIGR01343	UniPathway:UPA00048	UniParc:UPI0004EDC078	:

Description

BnaC08g47120DBnaC08g47120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWJ5]

Coordinates

chrLK033454:+:6153..9968

Molecular Weight (calculated)

54732.6 Da

IEP (calculated)

7.409

GRAVY (calculated)

-0.181

Length

505 amino acids

Sequence
(BLAST)

001: MASSVISSSP FLCKSAQQKD LGFPKSSQIS VHRCQKRAIS RKIVSVMAPQ RSSSATGSVK TGMTMTEKIL AKAAEKSQVV PGDNIWVNVD VLMTHDVCGP
101: GAFGIFKREF GEKAKVWDPE KIVVIPDHYI FTTDKRANRN VDIMREHCRE QNIKYFYDIT DLGDFRANPD YKGVCHVALA QEGHCRPGEV LLGTDSHTCT
201: AGAFGQFATG IGNTDAGFVL GTGKILLKVP PTMRFILDGE MPSYLQAKDL ILQIIGEISV AGATYKTMEF SGTTIESLTM EERMTLCNMV VEAGGKNGVI
301: PPDATTFNYV ENRTSVPFEP VYSDGNASFI ADYRFDVSKL EPVVAKPHSP DNRALARECK DVKIDRVYIG SCTGGKTEDF MAAAKLFHAA GKQVKVPTFL
401: VPATQKVWMD VYALPVPGAG GKTCAQIFEE AGCDTPTSPS CGACLGGPAD TYARLNEPQV CVSTTNRNFP GRMGHKEGQI YLASPYTAAA SALTGHVTDP
501: REFLQ

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.