Factsheet for Zm00001d053960_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06213	Sorghum	plastid	93.66	93.29
Zm00001d015088_P002	Maize	plastid	93.27	93.27
TraesCS6B01G108100.2	Wheat	plastid	89.31	89.13
TraesCS6D01G074300.1	Wheat	plastid	89.5	88.63
TraesCS6A01G080600.1	Wheat	plastid	89.31	88.43
Os02t0125100-01	Rice	plastid	89.11	87.55
TraesCS2B01G181900.1	Wheat	plastid	86.14	86.83
HORVU6Hr1G013950.5	Barley	plastid	88.71	84.21
GSMUA_Achr2P20910_001	Banana	plastid	72.08	83.49
KRH17398	Soybean	nucleus	81.78	82.6
PGSC0003DMT400003942	Potato	cytosol	30.5	81.91
PGSC0003DMT400003947	Potato	cytosol	30.5	81.91
VIT_05s0049g01980.t01	Wine grape	plastid	80.79	80.31
VIT_08s0056g01640.t01	Wine grape	plastid	81.78	80.19
Solyc03g005730.2.1	Tomato	plastid	80.2	79.57
PGSC0003DMT400035003	Potato	cytosol, plastid	80.2	79.57
Bra040341.1-P	Field mustard	plastid	77.62	77.78
CDY56070	Canola	plastid	77.62	77.62
CDY43713	Canola	plastid	77.43	77.58
GSMUA_Achr10P...	Banana	cytosol	36.04	77.45
CDY01130	Canola	plastid	77.62	77.17
Bra032708.1-P	Field mustard	plastid	77.43	76.67
Zm00001d053941_P001	Maize	cytosol	53.66	76.55
CDY47367	Canola	plastid	77.03	76.42
Solyc09g090900.2.1	Tomato	plastid	76.24	76.24
AT4G13430.1	Thale cress	plastid	76.24	75.64
KRG92248	Soybean	plastid	73.66	73.66
Zm00001d053950_P001	Maize	cytosol	27.33	58.72
CDX87247	Canola	cytosol	16.44	58.45
KRH05916	Soybean	plastid	81.78	43.07
Zm00001d020428_P001	Maize	cytosol	8.71	16.36
Zm00001d032214_P001	Maize	mitochondrion, plastid	9.31	13.17
Zm00001d024952_P005	Maize	cytosol	21.58	12.22
Zm00001d035277_P001	Maize	cytosol, mitochondrion, plastid	12.67	12.19
Zm00001d049409_P001	Maize	plasma membrane	22.57	11.55
Zm00001d004564_P004	Maize	plastid	21.78	10.97
Zm00001d006476_P004	Maize	mitochondrion	21.58	10.92
Zm00001d048358_P002	Maize	plastid	20.79	10.62
Zm00001d027558_P003	Maize	plastid	20.99	10.35
Zm00001d015497_P001	Maize	cytosol	3.96	7.14
Zm00001d040769_P001	Maize	mitochondrion	3.96	7.14

Protein Annotations

KEGG:00290+4.2.1.33	EntrezGene:100193712	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1	MapMan:9.5.1.3.1
ProteinID:AQK60854.1	ProteinID:AQK60855.1	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	UniProt:B4FG11
EMBL:BT036049	GO:GO:0003674	GO:GO:0003824	GO:GO:0003861	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016836	GO:GO:0051539
InterPro:Homoacnase/IPMdehydase_lsu	InterPro:IPMI_cat	InterPro:IPR015931	PFAM:PF00330	PRINTS:PR00415	PANTHER:PTHR43822
SUPFAM:SSF53732	TIGRFAMs:TIGR01343	UniParc:UPI00017B6F7D	EnsemblPlantsGene:Zm00001d053960	EnsemblPlants:Zm00001d053960_P003	EnsemblPlants:Zm00001d053960_T003
SEG:seg	:	:	:	:	:

Description

3-isopropylmalate dehydratase large subunit

Coordinates

chr4:+:244300872..244304783

Molecular Weight (calculated)

54606.2 Da

IEP (calculated)

7.115

GRAVY (calculated)

-0.175

Length

505 amino acids

Sequence
(BLAST)

001: MASSVSAAAK AAAAFAHKVQ QKELAAPAQR RAGLTRRTKP CSVRAVASPA RALSSTGSVK SAMTMTEKIL ARASERAALE PGENVWVDVD VLMTHDVCGP
101: GAFDIFKKEF GEDARVWDRE KLVVIPDHYI FTSDGRAKRN VDILRDFCAE QNIKYFYDIK DLSDFRANPD YKGVCHIALA QEGHCRPGEV LLGTDSHTCN
201: AGAFGQFATG IGNTDAGFVL GTGKALLKVP PTIRFILDGE MPPYLLAKDL ILQIIGEISV SGATYKSMEF VGSTVESLTM EERMTLCNMV IEAGGKNGVV
301: PADETTFKYL EGKTSVDYEP VYSDAQARFF SDYRFDVSKL EPVVAKPHSP DNRAPARECK DVKIDRVYIG SCTGGKTEDF LAAAKVFLAS GKKVKVPTFL
401: VPATQKVWLD IYSLPVPGSG GKTCSQIFEE AGCDTPASPN CGACLGGPRD TYARMNEPTV CVSTTNRNFP GRMGHKEGQI YLASPYTAAA SALTGYVTDP
501: RDFLM

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.